STRINGSTRING
KRT18011.1 KRT18011.1 KRT17119.1 KRT17119.1 KRT16622.1 KRT16622.1 KRT16716.1 KRT16716.1 dapB dapB KRT16121.1 KRT16121.1 dapA dapA KRT14965.1 KRT14965.1 KRT13981.1 KRT13981.1 KRT13982.1 KRT13982.1 KRT13185.1 KRT13185.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
KRT18011.1Acetylornithine deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (367 aa)
KRT17119.1N-acyl-L-amino acid amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (394 aa)
KRT16622.1N-acyl-L-amino acid amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (434 aa)
KRT16716.1Acetylornithine deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (356 aa)
dapB4-hydroxy-tetrahydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate; Belongs to the DapB family. (244 aa)
KRT16121.12,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the transferase hexapeptide repeat family. (272 aa)
dapA4-hydroxy-tetrahydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA). (295 aa)
KRT14965.1Peptidase dimerization domain protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (456 aa)
KRT13981.1N-acetylneuraminate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DapA family. (309 aa)
KRT13982.1N-acetylneuraminate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DapA family. (303 aa)
KRT13185.1Dihydrodipicolinate synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DapA family. (310 aa)
Your Current Organism:
Pedobacter ginsenosidimutans
NCBI taxonomy Id: 687842
Other names: JCM 16721, KACC 14530, P. ginsenosidimutans, Pedobacter ginsenosidimutans Yang et al. 2013, Pedobacter sp. THG-45, strain THG-45
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