STRINGSTRING
KRT17397.1 KRT17397.1 KRT17693.1 KRT17693.1 KRT17708.1 KRT17708.1 metE metE trmD trmD KRT17539.1 KRT17539.1 KRT18143.1 KRT18143.1 trmB trmB KRT18086.1 KRT18086.1 KRT18223.1 KRT18223.1 KRT17880.1 KRT17880.1 KRT17879.1 KRT17879.1 KRT15318.1 KRT15318.1 KRT14814.1 KRT14814.1 KRT14663.1 KRT14663.1 KRT14489.1 KRT14489.1 KRT14427.1 KRT14427.1 KRT14428.1 KRT14428.1 pcm pcm KRT14058.1 KRT14058.1 KRT13888.1 KRT13888.1 KRT13902.1 KRT13902.1 KRT13856.1 KRT13856.1 KRT13675.1 KRT13675.1 KRT13449.1 KRT13449.1 KRT13094.1 KRT13094.1 KRT13084.1 KRT13084.1 KRT15198.1 KRT15198.1 KRT14874.1 KRT14874.1 KRT14913.1 KRT14913.1 KRT14943.1 KRT14943.1 rsmG rsmG thyA thyA KRT14703.1 KRT14703.1 KRT14729.1 KRT14729.1 KRT14743.1 KRT14743.1 KRT14770.1 KRT14770.1 KRT15307.1 KRT15307.1 KRT15300.1 KRT15300.1 KRT15415.1 KRT15415.1 KRT15410.1 KRT15410.1 KRT15409.1 KRT15409.1 KRT15635.1 KRT15635.1 menG menG KRT15828.1 KRT15828.1 rsmH rsmH KRT15728.1 KRT15728.1 KRT16029.1 KRT16029.1 KRT16531.1 KRT16531.1 KRT16439.1 KRT16439.1 rlmH rlmH KRT16311.1 KRT16311.1 KRT15101.1 KRT15101.1 KRT16285.1 KRT16285.1 KRT16265.1 KRT16265.1 rlmF rlmF rlmN rlmN KRT16744.1 KRT16744.1 KRT16738.1 KRT16738.1 rsmA rsmA KRT16613.1 KRT16613.1 KRT17354.1 KRT17354.1 KRT17321.1 KRT17321.1 KRT17209.1 KRT17209.1 KRT17174.1 KRT17174.1 rsmI rsmI KRT16950.1 KRT16950.1 KRT16881.1 KRT16881.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
KRT17397.1SAM-dependent methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (243 aa)
KRT17693.1Chemotaxis protein CheR; Derived by automated computational analysis using gene prediction method: Protein Homology. (272 aa)
KRT17708.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (222 aa)
metE5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase; Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation; Belongs to the vitamin-B12 independent methionine synthase family. (777 aa)
trmDtRNA (guanine-N1)-methyltransferase; Specifically methylates guanosine-37 in various tRNAs. Belongs to the RNA methyltransferase TrmD family. (224 aa)
KRT17539.1Methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (212 aa)
KRT18143.1Pseudouridine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (394 aa)
trmBtRNA (guanine-N7)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. (216 aa)
KRT18086.1Methyltransferase type 11; Derived by automated computational analysis using gene prediction method: Protein Homology. (253 aa)
KRT18223.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (187 aa)
KRT17880.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (268 aa)
KRT17879.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1265 aa)
KRT15318.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (210 aa)
KRT14814.1Methyltransferase type 11; Derived by automated computational analysis using gene prediction method: Protein Homology. (300 aa)
KRT14663.1Methyltransferase type 11; Derived by automated computational analysis using gene prediction method: Protein Homology. (235 aa)
KRT14489.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (431 aa)
KRT14427.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (137 aa)
KRT14428.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (131 aa)
pcmprotein-L-isoaspartate O-methyltransferase; Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins. (218 aa)
KRT14058.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (395 aa)
KRT13888.1RNA methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. (255 aa)
KRT13902.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (260 aa)
KRT13856.1Dimethylhistidine N-methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (324 aa)
KRT13675.1uroporphyrin-III methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the precorrin methyltransferase family. (254 aa)
KRT13449.1tRNA methyltransferase; Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC). (233 aa)
KRT13094.1Ribosomal protein L11 methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (280 aa)
KRT13084.1Radical SAM protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (733 aa)
KRT15198.1RNA methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (392 aa)
KRT14874.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (76 aa)
KRT14913.116S rRNA (guanine(966)-N(2))-methyltransferase RsmD; Derived by automated computational analysis using gene prediction method: Protein Homology. (177 aa)
KRT14943.1N-6 DNA methylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (507 aa)
rsmG16S rRNA (guanine(527)-N(7))-methyltransferase RsmG; Specifically methylates the N7 position of a guanine in 16S rRNA; Belongs to the methyltransferase superfamily. RNA methyltransferase RsmG family. (211 aa)
thyAThymidylate synthase; Catalyzes the reductive methylation of 2'-deoxyuridine-5'- monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by- product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis. (264 aa)
KRT14703.1RNA methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. (248 aa)
KRT14729.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (246 aa)
KRT14743.1tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (220 aa)
KRT14770.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (286 aa)
KRT15307.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (286 aa)
KRT15300.1RNA methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (176 aa)
KRT15415.1uroporphyrin-III methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (264 aa)
KRT15410.1Siroheme synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (503 aa)
KRT15409.1uroporphyrin-III methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the precorrin methyltransferase family. (258 aa)
KRT15635.1RNA methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. (388 aa)
menGUbiquinone biosynthesis methyltransferase UbiE; Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2). (244 aa)
KRT15828.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (279 aa)
rsmHRibosomal RNA small subunit methyltransferase H; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA. (301 aa)
KRT15728.1Metal-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (82 aa)
KRT16029.1Cysteine methyltransferase; Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction: the enzyme is irreversibly inactivated. (159 aa)
KRT16531.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (273 aa)
KRT16439.1Methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (401 aa)
rlmH50S rRNA methyltransferase; Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA; Belongs to the RNA methyltransferase RlmH family. (157 aa)
KRT16311.1Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (293 aa)
KRT15101.1Endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology. (1038 aa)
KRT16285.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (251 aa)
KRT16265.1Methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (192 aa)
rlmF23S rRNA methyltransferase; Specifically methylates the adenine in position 1618 of 23S rRNA. (342 aa)
rlmN23S rRNA (adenine(2503)-C2)-methyltransferase; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs; Belongs to the radical SAM superfamily. RlmN family. (351 aa)
KRT16744.1SAM-dependent methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (233 aa)
KRT16738.1Methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (228 aa)
rsmA16S rRNA methyltransferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. (261 aa)
KRT16613.1SAM-dependent methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (260 aa)
KRT17354.1Methyltransferase type 11; Derived by automated computational analysis using gene prediction method: Protein Homology. (250 aa)
KRT17321.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (248 aa)
KRT17209.1Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate. (1233 aa)
KRT17174.116S rRNA methyltransferase; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit. (234 aa)
rsmI16S rRNA methyltransferase; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA. (237 aa)
KRT16950.1Methyltransferase type 11; Derived by automated computational analysis using gene prediction method: Protein Homology. (195 aa)
KRT16881.1RNA methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. (470 aa)
Your Current Organism:
Pedobacter ginsenosidimutans
NCBI taxonomy Id: 687842
Other names: JCM 16721, KACC 14530, P. ginsenosidimutans, Pedobacter ginsenosidimutans Yang et al. 2013, Pedobacter sp. THG-45, strain THG-45
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