STRINGSTRING
KRT13855.1 KRT13855.1 KRT13987.1 KRT13987.1 KRT14078.1 KRT14078.1 serC-2 serC-2 KRT14186.1 KRT14186.1 KRT14182.1 KRT14182.1 KRT14347.1 KRT14347.1 iscS iscS KRT14636.1 KRT14636.1 KRT14844.1 KRT14844.1 KRT15007.1 KRT15007.1 metZ metZ KRT15260.1 KRT15260.1 KRT15404.1 KRT15404.1 serC serC KRT15596.1 KRT15596.1 KRT15580.1 KRT15580.1 KRT15787.1 KRT15787.1 KRT15746.1 KRT15746.1 hisC hisC KRT15971.1 KRT15971.1 KRT15919.1 KRT15919.1 hemL hemL KRT16836.1 KRT16836.1 KRT16711.1 KRT16711.1 KRT17214.1 KRT17214.1 KRT17207.1 KRT17207.1 gcvP gcvP KRT17714.1 KRT17714.1 glyA glyA KRT13805.1 KRT13805.1 KRT13784.1 KRT13784.1 kynU kynU KRT13966.1 KRT13966.1 KRT13571.1 KRT13571.1 KRT13025.1 KRT13025.1 KRT13027.1 KRT13027.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
KRT13855.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (357 aa)
KRT13987.1Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (470 aa)
KRT14078.1Cystathionine gamma-synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (379 aa)
serC-23-phosphoserine/phosphohydroxythreonine aminotransferase; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. SerC subfamily. (357 aa)
KRT14186.1Capsular biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DegT/DnrJ/EryC1 family. (424 aa)
KRT14182.1Aminotransferase DegT; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DegT/DnrJ/EryC1 family. (385 aa)
KRT14347.1Aspartate aminotransferase; Catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate; Derived by automated computational analysis using gene prediction method: Protein Homology. (399 aa)
iscSCysteine desulfurase; Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. NifS/IscS subfamily. (403 aa)
KRT14636.18-amino-7-oxononanoate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (401 aa)
KRT14844.1L-lysine 6-transaminase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (443 aa)
KRT15007.1Cysteine desulfurase; Derived by automated computational analysis using gene prediction method: Protein Homology. (382 aa)
metZO-succinylhomoserine sulfhydrylase; Catalyzes the formation of L-homocysteine from O-succinyl-L- homoserine (OSHS) and hydrogen sulfide. (388 aa)
KRT15260.18-amino-7-oxononanoate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (373 aa)
KRT15404.1Cytochrome C biogenesis protein CcmH; Derived by automated computational analysis using gene prediction method: Protein Homology. (513 aa)
serC3-phosphoserine/phosphohydroxythreonine aminotransferase; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. SerC subfamily. (365 aa)
KRT15596.1Aminotransferase class III; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (396 aa)
KRT15580.12-amino-3-ketobutyrate CoA ligase; Catalyzes the formation of 2-amino-3-oxobutanoate from acetyl-CoA and glycine; Derived by automated computational analysis using gene prediction method: Protein Homology. (338 aa)
KRT15787.18-amino-7-oxononanoate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (413 aa)
KRT15746.1Threonine aldolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (340 aa)
hisCHistidinol phosphate aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily. (346 aa)
KRT15971.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DegT/DnrJ/EryC1 family. (399 aa)
KRT15919.12-amino-3-ketobutyrate CoA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology. (424 aa)
hemLGlutamate-1-semialdehyde aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (456 aa)
KRT16836.1Acetylornithine aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (376 aa)
KRT16711.1Aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (417 aa)
KRT17214.1Histidine decarboxylase; Catalyzes the formation of histamine from L-histidine; Derived by automated computational analysis using gene prediction method: Protein Homology. (377 aa)
KRT17207.1Amino acid decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (463 aa)
gcvPGlycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. (958 aa)
KRT17714.1Aminotransferase class I/II; Derived by automated computational analysis using gene prediction method: Protein Homology. (348 aa)
glyASerine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism. (423 aa)
KRT13805.1Aspartate aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (380 aa)
KRT13784.1Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; Catalyzes the formation of S-adenosyl-4-methylthionine-2-oxobutanoate and 7,8-diaminononanoate from S-adenosyl-L-methionine and 8-amino-7-oxononanoate; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (434 aa)
kynUKynureninase; Catalyzes the cleavage of L-kynurenine (L-Kyn) and L-3- hydroxykynurenine (L-3OHKyn) into anthranilic acid (AA) and 3- hydroxyanthranilic acid (3-OHAA), respectively. (429 aa)
KRT13966.1Aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (381 aa)
KRT13571.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (323 aa)
KRT13025.1Cystathionine gamma-synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (371 aa)
KRT13027.1O-acetylhomoserine aminocarboxypropyltransferase; Catalyzes the formation of L-methionine and acetate from O-acetyl-L-homoserine and methanethiol; Derived by automated computational analysis using gene prediction method: Protein Homology. (443 aa)
Your Current Organism:
Pedobacter ginsenosidimutans
NCBI taxonomy Id: 687842
Other names: JCM 16721, KACC 14530, P. ginsenosidimutans, Pedobacter ginsenosidimutans Yang et al. 2013, Pedobacter sp. THG-45, strain THG-45
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