STRINGSTRING
KRT18054.1 KRT18054.1 KRT16865.1 KRT16865.1 gmd gmd KRT16866.1 KRT16866.1 KRT16201.1 KRT16201.1 KRT14707.1 KRT14707.1 KRT13170.1 KRT13170.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
KRT18054.1dTDP-glucose 4,6-dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily. (350 aa)
KRT16865.1UDP-glucose 4-epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the NAD(P)-dependent epimerase/dehydratase family. (340 aa)
gmdGDP-mannose 4,6 dehydratase; Catalyzes the conversion of GDP-D-mannose to GDP-4-dehydro-6- deoxy-D-mannose. (370 aa)
KRT16866.1NAD-dependent dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology. (329 aa)
KRT16201.1NmrA family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (251 aa)
KRT14707.1Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (216 aa)
KRT13170.1Epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (213 aa)
Your Current Organism:
Pedobacter ginsenosidimutans
NCBI taxonomy Id: 687842
Other names: JCM 16721, KACC 14530, P. ginsenosidimutans, Pedobacter ginsenosidimutans Yang et al. 2013, Pedobacter sp. THG-45, strain THG-45
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