STRINGSTRING
KRT13188.1 KRT13188.1 KRT13425.1 KRT13425.1 KRT15064.1 KRT15064.1 KRT14849.1 KRT14849.1 KRT14848.1 KRT14848.1 KRT15091.1 KRT15091.1 KRT15240.1 KRT15240.1 KRT15265.1 KRT15265.1 KRT15527.1 KRT15527.1 KRT15685.1 KRT15685.1 KRT16510.1 KRT16510.1 rnc rnc KRT16867.1 KRT16867.1 KRT18157.1 KRT18157.1 KRT18155.1 KRT18155.1 KRT18154.1 KRT18154.1 KRT18234.1 KRT18234.1 KRT18233.1 KRT18233.1 KRT18152.1 KRT18152.1 uxaC uxaC KRT18231.1 KRT18231.1 KRT18230.1 KRT18230.1 xylA xylA KRT18123.1 KRT18123.1 KRT17856.1 KRT17856.1 KRT13514.1 KRT13514.1 KRT13546.1 KRT13546.1 KRT13568.1 KRT13568.1 KRT13606.1 KRT13606.1 KRT13751.1 KRT13751.1 araA araA araD araD KRT13957.1 KRT13957.1 uxuA uxuA KRT14021.1 KRT14021.1 KRT14122.1 KRT14122.1 KRT14536.1 KRT14536.1 KRT14499.1 KRT14499.1 KRT14561.1 KRT14561.1 kduI kduI KRT14674.1 KRT14674.1 KRT15046.1 KRT15046.1 KRT14980.1 KRT14980.1 KRT13135.1 KRT13135.1 KRT13380.1 KRT13380.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
KRT13188.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (222 aa)
KRT13425.1Polygalacturonase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 28 family. (528 aa)
KRT15064.1Pectate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1033 aa)
KRT14849.1Polysaccharide lyase; Derived by automated computational analysis using gene prediction method: Protein Homology. (546 aa)
KRT14848.1Polysaccharide lyase; Derived by automated computational analysis using gene prediction method: Protein Homology. (551 aa)
KRT15091.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (311 aa)
KRT15240.1Endo-polygalacturonase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 28 family. (484 aa)
KRT15265.1tolB protein precursor; Derived by automated computational analysis using gene prediction method: Protein Homology. (1057 aa)
KRT15527.1Altronate hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (545 aa)
KRT15685.1Sugar isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (426 aa)
KRT16510.1FAD-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (472 aa)
rncRibonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. (242 aa)
KRT16867.1UDP-glucose 6-dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (436 aa)
KRT18157.1GDSL family lipase; Derived by automated computational analysis using gene prediction method: Protein Homology. (263 aa)
KRT18155.1Pectin esterase; Derived by automated computational analysis using gene prediction method: Protein Homology. (318 aa)
KRT18154.1Glycoside hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 28 family. (557 aa)
KRT18234.1Pectate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology. (342 aa)
KRT18233.1Altronate oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (503 aa)
KRT18152.1Altronate hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (548 aa)
uxaCGlucuronate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (466 aa)
KRT18231.1GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (246 aa)
KRT18230.1Pectin esterase; Derived by automated computational analysis using gene prediction method: Protein Homology. (333 aa)
xylAXylose isomerase; Catalyzes the interconversion of D-xylose to D-xylulose; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the xylose isomerase family. (443 aa)
KRT18123.1Carbohydrate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (494 aa)
KRT17856.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 28 family. (502 aa)
KRT13514.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (444 aa)
KRT13546.1Glycoside hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 28 family. (475 aa)
KRT13568.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (465 aa)
KRT13606.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 28 family. (514 aa)
KRT13751.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (337 aa)
araAL-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose. (496 aa)
araDCatalyzes the isomerization of L-ribulose 5-phosphate to D-xylulose 5-phosphate in the anaerobic catabolism of L-ascorbate; links the arabinose metabolic pathway to the pentose phosphate pathway and allows the bacteria to use arabinose as an energy source; Derived by automated computational analysis using gene prediction method: Protein Homology. (233 aa)
KRT13957.1Ribulokinase; Catalyzes the phosphorylation of ribulose to ribulose 5-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ribulokinase family. (566 aa)
uxuAMannonate dehydratase; Catalyzes the dehydration of D-mannonate. (389 aa)
KRT14021.1Beta-glucuronidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 2 family. (609 aa)
KRT14122.1Ribulose phosphate epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ribulose-phosphate 3-epimerase family. (223 aa)
KRT14536.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (409 aa)
KRT14499.1exo-poly-alpha-D-galacturonosidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 28 family. (472 aa)
KRT14561.1Catalyzes the formation of 3-dehydro-2-deoxy-D-gluconate from 2-deoxy-D-gluconate; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (261 aa)
kduI5-keto-4-deoxyuronate isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family. (279 aa)
KRT14674.1Exopolygalacturonase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 28 family. (417 aa)
KRT15046.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 28 family. (528 aa)
KRT14980.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (934 aa)
KRT13135.1Pectate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology. (374 aa)
KRT13380.1Endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology. (299 aa)
Your Current Organism:
Pedobacter ginsenosidimutans
NCBI taxonomy Id: 687842
Other names: JCM 16721, KACC 14530, P. ginsenosidimutans, Pedobacter ginsenosidimutans Yang et al. 2013, Pedobacter sp. THG-45, strain THG-45
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.