STRINGSTRING
xylA xylA pfkA pfkA KRT17445.1 KRT17445.1 KRT16666.1 KRT16666.1 KRT16699.1 KRT16699.1 KRT16835.1 KRT16835.1 KRT16802.1 KRT16802.1 KRT16208.1 KRT16208.1 KRT16510.1 KRT16510.1 KRT15684.1 KRT15684.1 KRT15526.1 KRT15526.1 KRT15867.1 KRT15867.1 pfkA-2 pfkA-2 KRT15685.1 KRT15685.1 KRT13428.1 KRT13428.1 KRT13430.1 KRT13430.1 KRT13187.1 KRT13187.1 KRT13095.1 KRT13095.1 gmd gmd KRT17981.1 KRT17981.1 KRT18033.1 KRT18033.1 fcl fcl fcl-2 fcl-2 KRT13427.1 KRT13427.1 fbp fbp KRT13707.1 KRT13707.1 KRT13961.1 KRT13961.1 KRT13952.1 KRT13952.1 KRT13887.1 KRT13887.1 KRT14534.1 KRT14534.1 KRT14589.1 KRT14589.1 KRT15008.1 KRT15008.1 KRT14997.1 KRT14997.1 KRT17895.1 KRT17895.1 KRT17898.1 KRT17898.1 KRT18209.1 KRT18209.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
xylAXylose isomerase; Catalyzes the interconversion of D-xylose to D-xylulose; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the xylose isomerase family. (443 aa)
pfkA6-phosphofructokinase; Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis. (327 aa)
KRT17445.1L-fucose dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (344 aa)
KRT16666.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (293 aa)
KRT16699.1Ribose 5-phosphate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (145 aa)
KRT16835.1Glycoside hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 32 family. (505 aa)
KRT16802.1Glycine cleavage system protein H; Derived by automated computational analysis using gene prediction method: Protein Homology. (133 aa)
KRT16208.1Cupin; Derived by automated computational analysis using gene prediction method: Protein Homology. (141 aa)
KRT16510.1FAD-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (472 aa)
KRT15684.1Carbohydrate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (461 aa)
KRT15526.1Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (260 aa)
KRT15867.11,4-beta-xylanase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 5 (cellulase A) family. (359 aa)
pfkA-26-phosphofructokinase; Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis. (328 aa)
KRT15685.1Sugar isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (426 aa)
KRT13428.1Ureidoglycolate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology. (284 aa)
KRT13430.1Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (273 aa)
KRT13187.1Fucose isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (544 aa)
KRT13095.1Triosephosphate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (193 aa)
gmdGDP-mannose 4,6 dehydratase; Catalyzes the conversion of GDP-D-mannose to GDP-4-dehydro-6- deoxy-D-mannose. (370 aa)
KRT17981.1Cupin; Derived by automated computational analysis using gene prediction method: Protein Homology. (163 aa)
KRT18033.1Mannose-1-phosphate guanylyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (359 aa)
fclGDP-fucose synthetase; Catalyzes the two-step NADP-dependent conversion of GDP-4- dehydro-6-deoxy-D-mannose to GDP-fucose, involving an epimerase and a reductase reaction. (317 aa)
fcl-2GDP-fucose synthetase; Catalyzes the two-step NADP-dependent conversion of GDP-4- dehydro-6-deoxy-D-mannose to GDP-fucose, involving an epimerase and a reductase reaction. (308 aa)
KRT13427.1Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (254 aa)
fbpFructose 1,6-bisphosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the FBPase class 1 family. (359 aa)
KRT13707.1Glycosyl hydrolase family 32; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 32 family. (504 aa)
KRT13961.1Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (262 aa)
KRT13952.1Cupin; Derived by automated computational analysis using gene prediction method: Protein Homology. (116 aa)
KRT13887.1Mannose-1-phosphate guanylyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (363 aa)
KRT14534.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (296 aa)
KRT14589.1Phosphoheptose isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (165 aa)
KRT15008.1Phosphoglucosamine mutase; Derived by automated computational analysis using gene prediction method: Protein Homology. (461 aa)
KRT14997.1Class II fructose-bisphosphate aldolase; Catalyzes the aldol condensation of dihydroxyacetone phosphate (DHAP or glycerone-phosphate) with glyceraldehyde 3-phosphate (G3P) to form fructose 1,6-bisphosphate (FBP) in gluconeogenesis and the reverse reaction in glycolysis; Belongs to the class II fructose-bisphosphate aldolase family. (359 aa)
KRT17895.1Beta-mannosidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 26 family. (373 aa)
KRT17898.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 26 family. (409 aa)
KRT18209.1Beta-mannosidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 5 (cellulase A) family. (428 aa)
Your Current Organism:
Pedobacter ginsenosidimutans
NCBI taxonomy Id: 687842
Other names: JCM 16721, KACC 14530, P. ginsenosidimutans, Pedobacter ginsenosidimutans Yang et al. 2013, Pedobacter sp. THG-45, strain THG-45
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