STRINGSTRING
mdh mdh ackA ackA mqo-2 mqo-2 pckA-2 pckA-2 KRT13415.1 KRT13415.1 KRT13431.1 KRT13431.1 KRT13458.1 KRT13458.1 KRT13457.1 KRT13457.1 KRT13535.1 KRT13535.1 KRT13787.1 KRT13787.1 KRT13860.1 KRT13860.1 KRT13853.1 KRT13853.1 KRT13954.1 KRT13954.1 KRT14039.1 KRT14039.1 KRT14212.1 KRT14212.1 KRT14208.1 KRT14208.1 KRT14323.1 KRT14323.1 KRT14308.1 KRT14308.1 KRT14441.1 KRT14441.1 KRT14660.1 KRT14660.1 KRT14802.1 KRT14802.1 KRT14801.1 KRT14801.1 KRT14768.1 KRT14768.1 accD accD KRT15320.1 KRT15320.1 KRT15892.1 KRT15892.1 KRT15745.1 KRT15745.1 KRT16696.1 KRT16696.1 KRT16695.1 KRT16695.1 pckA pckA KRT17153.1 KRT17153.1 fumC fumC KRT17063.1 KRT17063.1 KRT17029.1 KRT17029.1 accA accA KRT16928.1 KRT16928.1 KRT16901.1 KRT16901.1 KRT17643.1 KRT17643.1 KRT17637.1 KRT17637.1 KRT17553.1 KRT17553.1 KRT18137.1 KRT18137.1 KRT18128.1 KRT18128.1 KRT18100.1 KRT18100.1 pdhA pdhA KRT17943.1 KRT17943.1 KRT17868.1 KRT17868.1 KRT17796.1 KRT17796.1 KRT17795.1 KRT17795.1 KRT16085.1 KRT16085.1 KRT16552.1 KRT16552.1 KRT16507.1 KRT16507.1 mqo mqo KRT16369.1 KRT16369.1 KRT16344.1 KRT16344.1 KRT16270.1 KRT16270.1 KRT16815.1 KRT16815.1 KRT16807.1 KRT16807.1 KRT16777.1 KRT16777.1 KRT16759.1 KRT16759.1 KRT16755.1 KRT16755.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
mdhMalate dehydrogenase; Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 3 family. (312 aa)
ackAAcetate kinase; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family. (398 aa)
mqo-2Malate:quinone oxidoreductase; Malate dehydrogenase; catalyzes the oxidation of malate to oxaloacetate; Derived by automated computational analysis using gene prediction method: Protein Homology. (483 aa)
pckA-2Phosphoenolpyruvate carboxykinase; Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA. (530 aa)
KRT13415.1Glyoxalase; Derived by automated computational analysis using gene prediction method: Protein Homology. (141 aa)
KRT13431.1Alpha-hydroxy-acid oxidizing enzyme; Derived by automated computational analysis using gene prediction method: Protein Homology. (389 aa)
KRT13458.1MBL fold metallo-hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (279 aa)
KRT13457.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (462 aa)
KRT13535.1acetyl-CoA acetyltransferase; Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the thiolase-like superfamily. Thiolase family. (391 aa)
KRT13787.1Extradiol dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (138 aa)
KRT13860.1Mercuric reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (460 aa)
KRT13853.1Glyoxalase; Derived by automated computational analysis using gene prediction method: Protein Homology. (127 aa)
KRT13954.1Glyoxalase; Derived by automated computational analysis using gene prediction method: Protein Homology. (118 aa)
KRT14039.1Glyoxalase; Derived by automated computational analysis using gene prediction method: Protein Homology. (134 aa)
KRT14212.1Import component protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (110 aa)
KRT14208.1Import component protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (109 aa)
KRT14323.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (322 aa)
KRT14308.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (129 aa)
KRT14441.1Hydroxyacid dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. (334 aa)
KRT14660.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (126 aa)
KRT14802.1UDP-glucose 4-epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (124 aa)
KRT14801.1Catalyzes the oxidation of acetaldehyde, benzaldehyde, propionaldehyde and other aldehydes; Derived by automated computational analysis using gene prediction method: Protein Homology. (501 aa)
KRT14768.1MBL fold metallo-hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (296 aa)
accDAcetyl-coenzyme A carboxylase carboxyl transferase subunit beta; Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl-CoA; Belongs to the AccD/PCCB family. (281 aa)
KRT15320.1Glyoxalase; Derived by automated computational analysis using gene prediction method: Protein Homology. (139 aa)
KRT15892.1Aldehyde dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the aldehyde dehydrogenase family. (472 aa)
KRT15745.1Biotin carboxylase; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA. (503 aa)
KRT16696.1acetyl-CoA carboxylase biotin carboxylase subunit; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA. (446 aa)
KRT16695.1acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA. (158 aa)
pckAPhosphoenolpyruvate carboxykinase; Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA. (531 aa)
KRT17153.1Glyoxalase; Derived by automated computational analysis using gene prediction method: Protein Homology. (148 aa)
fumCFumarate hydratase; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily. (465 aa)
KRT17063.1Catalyzes the oxidation of dihydrolipoamide to lipoamide; Derived by automated computational analysis using gene prediction method: Protein Homology. (468 aa)
KRT17029.1Extradiol dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (137 aa)
accAacetyl-CoA carboxyl transferase; Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA. (317 aa)
KRT16928.1MBL fold metallo-hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (470 aa)
KRT16901.1MBL fold metallo-hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (256 aa)
KRT17643.1Aldehyde dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the aldehyde dehydrogenase family. (481 aa)
KRT17637.1Phosphoenolpyruvate carboxylase; Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle. (861 aa)
KRT17553.1Dimethylallyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (225 aa)
KRT18137.1Aldehyde dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the aldehyde dehydrogenase family. (513 aa)
KRT18128.1MBL fold metallo-hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (212 aa)
KRT18100.1Pyruvate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (558 aa)
pdhAPyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). (331 aa)
KRT17943.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (142 aa)
KRT17868.1Zn-dependent hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (462 aa)
KRT17796.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (292 aa)
KRT17795.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (290 aa)
KRT16085.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (124 aa)
KRT16552.1Bleomycin resistance protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (116 aa)
KRT16507.1Glyoxalase; Derived by automated computational analysis using gene prediction method: Protein Homology. (116 aa)
mqoMalate:quinone oxidoreductase; Malate dehydrogenase; catalyzes the oxidation of malate to oxaloacetate; Derived by automated computational analysis using gene prediction method: Protein Homology. (505 aa)
KRT16369.1Acetyl-coenzyme A synthetase; Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA. (631 aa)
KRT16344.1Glyoxalase; Derived by automated computational analysis using gene prediction method: Protein Homology. (139 aa)
KRT16270.1Bleomycin resistance protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (129 aa)
KRT16815.1Acylphosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology. (90 aa)
KRT16807.1Malic enzyme; NADP-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; decarboxylates oxaloacetate; Derived by automated computational analysis using gene prediction method: Protein Homology. (771 aa)
KRT16777.1Pyruvate dehydrogenase; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2. (328 aa)
KRT16759.1Pyruvate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the pyruvate kinase family. (476 aa)
KRT16755.1Phosphoenolpyruvate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (873 aa)
Your Current Organism:
Pedobacter ginsenosidimutans
NCBI taxonomy Id: 687842
Other names: JCM 16721, KACC 14530, P. ginsenosidimutans, Pedobacter ginsenosidimutans Yang et al. 2013, Pedobacter sp. THG-45, strain THG-45
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