STRINGSTRING
KRT14168.1 KRT14168.1 KRT14353.1 KRT14353.1 priA priA KRT14731.1 KRT14731.1 KRT14719.1 KRT14719.1 KRT14910.1 KRT14910.1 KRT15115.1 KRT15115.1 recO recO KRT15543.1 KRT15543.1 KRT15542.1 KRT15542.1 KRT15460.1 KRT15460.1 KRT15585.1 KRT15585.1 KRT15724.1 KRT15724.1 dnaX dnaX KRT16104.1 KRT16104.1 KRT16058.1 KRT16058.1 KRT15913.1 KRT15913.1 KRT16823.1 KRT16823.1 ruvA ruvA KRT16775.1 KRT16775.1 KRT16707.1 KRT16707.1 KRT16834.1 KRT16834.1 ruvC ruvC KRT17336.1 KRT17336.1 recG recG recF recF KRT16946.1 KRT16946.1 KRT16899.1 KRT16899.1 KRT17596.1 KRT17596.1 KRT17537.1 KRT17537.1 KRT17486.1 KRT17486.1 KRT17485.1 KRT17485.1 polA polA KRT18056.1 KRT18056.1 KRT17995.1 KRT17995.1 KRT17726.1 KRT17726.1 KRT17748.1 KRT17748.1 KRT13646.1 KRT13646.1 KRT13789.1 KRT13789.1 KRT13540.1 KRT13540.1 recR recR recA recA ruvB ruvB KRT13070.1 KRT13070.1 KRT13742.1 KRT13742.1 KRT14098.1 KRT14098.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
KRT14168.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (225 aa)
KRT14353.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (269 aa)
priAPrimosomal protein N; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily. (826 aa)
KRT14731.1DNA polymerase III subunit delta; Derived by automated computational analysis using gene prediction method: Protein Homology. (340 aa)
KRT14719.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (585 aa)
KRT14910.1ATP-dependent endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology. (477 aa)
KRT15115.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (121 aa)
recODNA repair protein RecO; Involved in DNA repair and RecF pathway recombination. (241 aa)
KRT15543.1Tellurium resistance protein TerD; Derived by automated computational analysis using gene prediction method: Protein Homology. (204 aa)
KRT15542.1Chemical-damaging agent resistance protein C; Derived by automated computational analysis using gene prediction method: Protein Homology. (184 aa)
KRT15460.1DNA polymerase IV; Derived by automated computational analysis using gene prediction method: Protein Homology. (558 aa)
KRT15585.1Restriction endonuclease subunit S; Derived by automated computational analysis using gene prediction method: Protein Homology. (318 aa)
KRT15724.1Single-stranded DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (115 aa)
dnaXDNA polymerase III subunit gamma/tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. (607 aa)
KRT16104.1DNA polymerase III subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology. (1477 aa)
KRT16058.1DNA polymerase III subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] (374 aa)
KRT15913.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (403 aa)
KRT16823.1DNA-binding transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (229 aa)
ruvAATP-dependent DNA helicase RuvA; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB. (194 aa)
KRT16775.1DNA helicase UvrD; Derived by automated computational analysis using gene prediction method: Protein Homology. (1072 aa)
KRT16707.1Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (350 aa)
KRT16834.1Helicase; Derived by automated computational analysis using gene prediction method: Protein Homology. (752 aa)
ruvCHolliday junction resolvase; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group. (195 aa)
KRT17336.1Single-stranded DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (145 aa)
recGATP-dependent DNA helicase RecG; Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y- DNA); Belongs to the helicase family. RecG subfamily. (701 aa)
recFDNA recombination protein RecF; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP; Belongs to the RecF family. (367 aa)
KRT16946.1Peptidylprolyl isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (452 aa)
KRT16899.1single-stranded-DNA-specific exonuclease RecJ; Derived by automated computational analysis using gene prediction method: Protein Homology. (566 aa)
KRT17596.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (73 aa)
KRT17537.1DNA polymerase III subunit gamma/tau; Derived by automated computational analysis using gene prediction method: Protein Homology. (382 aa)
KRT17486.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (188 aa)
KRT17485.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (217 aa)
polADNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. (935 aa)
KRT18056.1Peptidylprolyl isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (694 aa)
KRT17995.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (322 aa)
KRT17726.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (144 aa)
KRT17748.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (396 aa)
KRT13646.1AAA family ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. (209 aa)
KRT13789.1DNA polymerase III subunit epsilon; Derived by automated computational analysis using gene prediction method: Protein Homology. (457 aa)
KRT13540.1DNA polymerase III subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology. (1003 aa)
recRRecombination protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO. (205 aa)
recADNA recombination/repair protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. (337 aa)
ruvBATP-dependent DNA helicase RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. (340 aa)
KRT13070.1DNA polymerase III subunit epsilon; Derived by automated computational analysis using gene prediction method: Protein Homology. (317 aa)
KRT13742.1DNA-binding transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (243 aa)
KRT14098.1RNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (104 aa)
Your Current Organism:
Pedobacter ginsenosidimutans
NCBI taxonomy Id: 687842
Other names: JCM 16721, KACC 14530, P. ginsenosidimutans, Pedobacter ginsenosidimutans Yang et al. 2013, Pedobacter sp. THG-45, strain THG-45
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