STRINGSTRING
OCH23850.1 OCH23850.1 OCH23878.1 OCH23878.1 OCH23893.1 OCH23893.1 OCH20192.1 OCH20192.1 rraB rraB OCH20321.1 OCH20321.1 OCH20336.1 OCH20336.1 OCH20352.1 OCH20352.1 zapB zapB OCH18598.1 OCH18598.1 OCH18649.1 OCH18649.1 OCH18651.1 OCH18651.1 OCH18751.1 OCH18751.1 srkA srkA OCH18754.1 OCH18754.1 OCH22976.1 OCH22976.1 OCH23122.1 OCH23122.1 OCH22629.1 OCH22629.1 OCH22672.1 OCH22672.1 trpR trpR OCH21525.1 OCH21525.1 OCH21532.1 OCH21532.1 OCH21663.1 OCH21663.1 OCH21816.1 OCH21816.1 matP matP zapC zapC OCH21831.1 OCH21831.1 proQ proQ OCH22496.1 OCH22496.1 OCH21921.1 OCH21921.1 OCH22008.1 OCH22008.1 OCH22109.1 OCH22109.1 OCH22139.1 OCH22139.1 OCH22140.1 OCH22140.1 OCH22141.1 OCH22141.1 OCH22232.1 OCH22232.1 OCH22246.1 OCH22246.1 OCH22247.1 OCH22247.1 OCH22253.1 OCH22253.1 OCH22307.1 OCH22307.1 OCH22309.1 OCH22309.1 lapB lapB lapA lapA OCH22386.1 OCH22386.1 OCH22387.1 OCH22387.1 OCH22408.1 OCH22408.1 OCH21365.1 OCH21365.1 OCH21366.1 OCH21366.1 OCH21427.1 OCH21427.1 seqA seqA OCH20805.1 OCH20805.1 OCH20884.1 OCH20884.1 OCH20885.1 OCH20885.1 OCH20908.1 OCH20908.1 syd syd OCH20944.1 OCH20944.1 OCH20415.1 OCH20415.1 OCH20589.1 OCH20589.1 OCH20419.1 OCH20419.1 OCH20420.1 OCH20420.1 OCH20421.1 OCH20421.1 OCH20464.1 OCH20464.1 OCH20517.1 OCH20517.1 OCH19493.1 OCH19493.1 OCH19494.1 OCH19494.1 OCH19517.1 OCH19517.1 OCH19554.1 OCH19554.1 OCH19623.1 OCH19623.1 OCH18408.1 OCH18408.1 OCH18443.1 OCH18443.1 OCH18444.1 OCH18444.1 OCH18455.1 OCH18455.1 OCH18446.1 OCH18446.1 argR argR OCH17841.1 OCH17841.1 OCH17874.1 OCH17874.1 OCH17896.1 OCH17896.1 OCH17897.1 OCH17897.1 OCH17580.1 OCH17580.1 OCH17581.1 OCH17581.1 OCH17726.1 OCH17726.1 dsbB dsbB fadR fadR OCH17597.1 OCH17597.1 OCH17599.1 OCH17599.1 OCH17607.1 OCH17607.1 OCH17703.1 OCH17703.1 OCH17704.1 OCH17704.1 OCH17032.1 OCH17032.1 mukE mukE mukB mukB OCH17093.1 OCH17093.1 OCH17094.1 OCH17094.1 OCH17095.1 OCH17095.1 OCH17113.1 OCH17113.1 OCH17159.1 OCH17159.1 OCH17178.1 OCH17178.1 OCH17179.1 OCH17179.1 OCH17188.1 OCH17188.1 OCH16939.1 OCH16939.1 OCH16611.1 OCH16611.1 OCH16612.1 OCH16612.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
OCH23850.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (197 aa)
OCH23878.1Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (176 aa)
OCH23893.1P pilus assembly/Cpx signaling pathway inhibitor/zinc-resistance associated protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (168 aa)
OCH20192.1Ligase; Derived by automated computational analysis using gene prediction method: Protein Homology. (587 aa)
rraBRibonuclease E inhibitor B; Globally modulates RNA abundance by binding to RNase E (Rne) and regulating its endonucleolytic activity. Can modulate Rne action in a substrate-dependent manner by altering the composition of the degradosome. (138 aa)
OCH20321.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (327 aa)
OCH20336.1Lipoprotein NlpI; May be involved in cell division. (327 aa)
OCH20352.1SMP protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (198 aa)
zapBCell division protein ZapB; Non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA. (80 aa)
OCH18598.1Choline-sulfatase; Derived by automated computational analysis using gene prediction method: Protein Homology. (616 aa)
OCH18649.1Universal stress protein UspB; Derived by automated computational analysis using gene prediction method: Protein Homology. (112 aa)
OCH18651.1Universal stress global response regulator UspA; Involved in resistance to DNA-damaging agents; Derived by automated computational analysis using gene prediction method: Protein Homology. (141 aa)
OCH18751.1Thiol:disulfide interchange protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (200 aa)
srkAStress response serine/threonine protein kinase YihE; A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response. (327 aa)
OCH18754.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (87 aa)
OCH22976.1Integrase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the 'phage' integrase family. (427 aa)
OCH23122.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (394 aa)
OCH22629.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (151 aa)
OCH22672.1Met repressor; This regulatory protein, when combined with SAM (S- adenosylmethionine) represses the expression of the methionine regulon and of enzymes involved in SAM synthesis. (106 aa)
trpRTrp operon repressor; This protein is an aporepressor. When complexed with L- tryptophan it binds the operator region of the trp operon and prevents the initiation of transcription. (108 aa)
OCH21525.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (383 aa)
OCH21532.1Exonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology. (176 aa)
OCH21663.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (335 aa)
OCH21816.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (183 aa)
matPMacrodomain Ter protein; Required for spatial organization of the terminus region of the chromosome (Ter macrodomain) during the cell cycle. Prevents early segregation of duplicated Ter macrodomains during cell division. Binds specifically to matS, which is a 13 bp signature motif repeated within the Ter macrodomain. (148 aa)
zapCCell division protein ZapC; Contributes to the efficiency of the cell division process by stabilizing the polymeric form of the cell division protein FtsZ. Acts by promoting interactions between FtsZ protofilaments and suppressing the GTPase activity of FtsZ. (179 aa)
OCH21831.1C-terminal processing peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (671 aa)
proQRNA chaperone ProQ; RNA chaperone with significant RNA binding, RNA strand exchange and RNA duplexing activities; Belongs to the ProQ family. (210 aa)
OCH22496.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (90 aa)
OCH21921.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (749 aa)
OCH22008.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0227 family. (183 aa)
OCH22109.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (81 aa)
OCH22139.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (256 aa)
OCH22140.1Prepilin peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (183 aa)
OCH22141.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (69 aa)
OCH22232.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0263 family. (107 aa)
OCH22246.1DNA transformation protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (194 aa)
OCH22247.1Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (308 aa)
OCH22253.1Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (560 aa)
OCH22307.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (198 aa)
OCH22309.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (149 aa)
lapBLipopolysaccharide assembly protein LapB; Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane; Belongs to the LapB family. (389 aa)
lapAHypothetical protein; Involved in the assembly of lipopolysaccharide (LPS). Belongs to the LapA family. (94 aa)
OCH22386.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0304 family. (166 aa)
OCH22387.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (352 aa)
OCH22408.1ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (261 aa)
OCH21365.1Phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology. (246 aa)
OCH21366.1Nucleoside/nucleotide kinase family protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (244 aa)
OCH21427.1Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (172 aa)
seqAReplication initiation regulator SeqA; Negative regulator of replication initiation, which contributes to regulation of DNA replication and ensures that replication initiation occurs exactly once per chromosome per cell cycle. Binds to pairs of hemimethylated GATC sequences in the oriC region, thus preventing assembly of replication proteins and re- initiation at newly replicated origins. Repression is relieved when the region becomes fully methylated. (180 aa)
OCH20805.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0255 family. (413 aa)
OCH20884.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0253 family. (68 aa)
OCH20885.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (62 aa)
OCH20908.1DNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology. (78 aa)
sydSecY-interacting protein; Interacts with the SecY protein in vivo. May bind preferentially to an uncomplexed state of SecY, thus functioning either as a chelating agent for excess SecY in the cell or as a regulatory factor that negatively controls the translocase function. Belongs to the Syd family. (182 aa)
OCH20944.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (743 aa)
OCH20415.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (67 aa)
OCH20589.1RNA polymerase sigma factor RpoE; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily. (192 aa)
OCH20419.1Anti-sigma E factor; An anti-sigma factor for extracytoplasmic function (ECF) sigma factor sigma-E (RpoE). ECF sigma factors are held in an inactive form by an anti-sigma factor until released by regulated intramembrane proteolysis (RIP). RIP occurs when an extracytoplasmic signal triggers a concerted proteolytic cascade to transmit information and elicit cellular responses. The membrane-spanning regulatory substrate protein is first cut periplasmically (site-1 protease, S1P, DegS), then within the membrane itself (site-2 protease, S2P, RseP), while cytoplasmic proteases finish degradi [...] (205 aa)
OCH20420.1sigma-E factor regulatory protein RseB; Derived by automated computational analysis using gene prediction method: Protein Homology. (325 aa)
OCH20421.1Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (161 aa)
OCH20464.1RNA polymerase sigma factor SigZ; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily. (182 aa)
OCH20517.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (126 aa)
OCH19493.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (118 aa)
OCH19494.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (693 aa)
OCH19517.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (828 aa)
OCH19554.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (340 aa)
OCH19623.1Endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology. (319 aa)
OCH18408.1AsmA family protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (660 aa)
OCH18443.1Methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (264 aa)
OCH18444.1MATE family efflux transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (443 aa)
OCH18455.1DNA-binding transcriptional regulator FabR; Derived by automated computational analysis using gene prediction method: Protein Homology. (213 aa)
OCH18446.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (124 aa)
argRArginine repressor; Regulates arginine biosynthesis genes. (156 aa)
OCH17841.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (333 aa)
OCH17874.1Acetylglucosamine transferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (220 aa)
OCH17896.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (183 aa)
OCH17897.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (71 aa)
OCH17580.1Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (601 aa)
OCH17581.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0352 family. (75 aa)
OCH17726.1Nucleoid-associated protein YejK; Derived by automated computational analysis using gene prediction method: Protein Homology. (338 aa)
dsbBDisulfide bond formation protein B; Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein; Belongs to the DsbB family. (171 aa)
fadRFatty acid metabolism regulator; Multifunctional regulator of fatty acid metabolism. (280 aa)
OCH17597.1Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the histone-like protein H-NS family. (134 aa)
OCH17599.1Nucleotidyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (258 aa)
OCH17607.1DNA helicase IV; Derived by automated computational analysis using gene prediction method: Protein Homology. (687 aa)
OCH17703.1Histone acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (160 aa)
OCH17704.1Phosphohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (485 aa)
OCH17032.1Chromosome partition protein MukF; Involved in chromosome condensation, segregation and cell cycle progression. May participate in facilitating chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division. Not required for mini-F plasmid partitioning. Probably acts via its interaction with MukB and MukE. Overexpression results in anucleate cells. It has a calcium binding activity. (445 aa)
mukEChromosome partitioning protein MukE; Involved in chromosome condensation, segregation and cell cycle progression. May participate in facilitating chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division. Probably acts via its interaction with MukB and MukF. (247 aa)
mukBCell division protein MukB; SMC (structural maintenance of chromosomes) family of proteins; involved in chromosome condensatin and partitioning; forms a homodimer and the C-terminal is essential for DNA-binding activity while the purified N-terminal domain binds FtsZ; mutations result in cell division defects; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the SMC family. MukB subfamily. (1490 aa)
OCH17093.1Hemagglutinin; Derived by automated computational analysis using gene prediction method: Protein Homology. (3354 aa)
OCH17094.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1175 aa)
OCH17095.1Cell envelope biogenesis protein OmpA; Derived by automated computational analysis using gene prediction method: Protein Homology. (304 aa)
OCH17113.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (185 aa)
OCH17159.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0265 family. (102 aa)
OCH17178.1Protein viaA; Derived by automated computational analysis using gene prediction method: Protein Homology. (482 aa)
OCH17179.1AAA family ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. (546 aa)
OCH17188.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (312 aa)
OCH16939.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0231 family. (122 aa)
OCH16611.1Chromosome partitioning protein ParA; Derived by automated computational analysis using gene prediction method: Protein Homology. (407 aa)
OCH16612.1Chromosome partitioning protein ParB; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ParB family. (324 aa)
Your Current Organism:
Aliivibrio logei
NCBI taxonomy Id: 688
Other names: A. logei, ATCC 29985, CCUG 20283, CIP 104991, LMG 21012, LMG:21012, NCIMB 2252, Photobacterium logei, Vibrio logei, strain 584
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