(43 nodes) Mixed, incl. Tetratricopeptide repeats, and Chromatin remodeling network (Ohtaekwangia koreensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SKC38890.1	Tfp pilus assembly protein PilF. (362 aa)
	SKC38922.1	Tetratricopeptide repeat-containing protein. (269 aa)
	SKC39528.1	Flp pilus assembly protein TadD, contains TPR repeats. (1158 aa)
	SKC39786.1	WD40 repeat. (1074 aa)
	SKC40408.1	TPR repeat-containing protein; Belongs to the AAA ATPase family. (440 aa)
	SKC41066.1	Hypothetical protein. (107 aa)
	SKC43053.1	RNA polymerase Rpb6; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. (103 aa)
	SKC49017.1	DnaJ domain-containing protein. (263 aa)
	SKC50423.1	Signal transduction histidine kinase. (642 aa)
	SKC51647.1	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain). (87 aa)
	SKC52323.1	Ankyrin repeat-containing protein. (196 aa)
	SKC53342.1	Tetratricopeptide repeat-containing protein. (381 aa)
	SKC54227.1	Hypothetical protein. (780 aa)
	SKC56892.1	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain). (108 aa)
	SKC59908.1	TPR repeat-containing protein. (211 aa)
	alaS	alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. (867 aa)
	SKC60040.1	Protein of unknown function. (260 aa)
	SKC60596.1	WD domain-containing protein, G-beta repeat-containing protein. (1043 aa)
	SKC62051.1	Tetratricopeptide repeat-containing protein. (523 aa)
	SKC62102.1	Uncharacterized protein. (760 aa)
	SKC65750.1	AAA-like domain-containing protein. (873 aa)
	SKC66028.1	Hypothetical protein. (418 aa)
	SKC66626.1	Hypothetical protein. (176 aa)
	SKC71617.1	Signal transduction histidine kinase. (628 aa)
	SKC71940.1	Monoamine oxidase. (488 aa)
	SKC75053.1	Monoamine oxidase. (428 aa)
	SKC75090.1	Superfamily II DNA or RNA helicase, SNF2 family. (981 aa)
	SKC75226.1	Prepilin-type processing-associated H-X9-DG domain-containing protein; Manually curated. (370 aa)
	gpmI	Phosphoglycerate mutase; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate. (508 aa)
	SKC76876.1	Molecular chaperone HtpG; Molecular chaperone. Has ATPase activity. (636 aa)
	SKC78153.1	WD domain-containing protein, G-beta repeat-containing protein. (302 aa)
	rpoB	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1290 aa)
	SKC81316.1	Superfamily II DNA or RNA helicase, SNF2 family. (976 aa)
	SKC82030.1	TolB amino-terminal domain-containing protein. (641 aa)
	SKC82137.1	Tetratricopeptide repeat-containing protein. (206 aa)
	SKC82164.1	Tfp pilus assembly protein PilF. (402 aa)
	SKC82625.1	Leucine-rich repeat (LRR) protein. (475 aa)
	SKC84181.1	Hypothetical chaperone protein. (420 aa)
	SKC85128.1	Helicase associated domain-containing protein. (599 aa)
	SKC86177.1	Tetratricopeptide repeat-containing protein. (396 aa)
	SKC87282.1	Type I phosphodiesterase / nucleotide pyrophosphatase. (373 aa)
	SKC87813.1	Superfamily II DNA or RNA helicase, SNF2 family. (984 aa)
	SKC89028.1	Hypothetical protein. (194 aa)

Your Current Organism:

Ohtaekwangia koreensis

NCBI taxonomy Id: 688867
Other names: Bacteroidetes bacterium 3B-2, CCUG 58939, DSM 25262, KCTC 23018, O. koreensis, Ohtaekwangia koreensis Yoon et al. 2011, strain 3B-2

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SKC38890.1	SKC38922.1	SAMN05660236_0064	SAMN05660236_0065	Tfp pilus assembly protein PilF.	Tetratricopeptide repeat-containing protein.	0.911
SKC38890.1	SKC39528.1	SAMN05660236_0064	SAMN05660236_0130	Tfp pilus assembly protein PilF.	Flp pilus assembly protein TadD, contains TPR repeats.	0.485
SKC38890.1	SKC39786.1	SAMN05660236_0064	SAMN05660236_0149	Tfp pilus assembly protein PilF.	WD40 repeat.	0.648
SKC38890.1	SKC41066.1	SAMN05660236_0064	SAMN05660236_0247	Tfp pilus assembly protein PilF.	Hypothetical protein.	0.521
SKC38890.1	SKC43053.1	SAMN05660236_0064	SAMN05660236_0444	Tfp pilus assembly protein PilF.	RNA polymerase Rpb6; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.	0.772
SKC38890.1	SKC49017.1	SAMN05660236_0064	SAMN05660236_0971	Tfp pilus assembly protein PilF.	DnaJ domain-containing protein.	0.603
SKC38890.1	SKC52323.1	SAMN05660236_0064	SAMN05660236_1235	Tfp pilus assembly protein PilF.	Ankyrin repeat-containing protein.	0.836
SKC38890.1	SKC53342.1	SAMN05660236_0064	SAMN05660236_1327	Tfp pilus assembly protein PilF.	Tetratricopeptide repeat-containing protein.	0.445
SKC38890.1	SKC59908.1	SAMN05660236_0064	SAMN05660236_1916	Tfp pilus assembly protein PilF.	TPR repeat-containing protein.	0.790
SKC38890.1	SKC60040.1	SAMN05660236_0064	SAMN05660236_1926	Tfp pilus assembly protein PilF.	Protein of unknown function.	0.521
SKC38890.1	SKC60596.1	SAMN05660236_0064	SAMN05660236_1971	Tfp pilus assembly protein PilF.	WD domain-containing protein, G-beta repeat-containing protein.	0.739
SKC38890.1	SKC62102.1	SAMN05660236_0064	SAMN05660236_2094	Tfp pilus assembly protein PilF.	Uncharacterized protein.	0.474
SKC38890.1	SKC65750.1	SAMN05660236_0064	SAMN05660236_2451	Tfp pilus assembly protein PilF.	AAA-like domain-containing protein.	0.610
SKC38890.1	SKC66626.1	SAMN05660236_0064	SAMN05660236_2556	Tfp pilus assembly protein PilF.	Hypothetical protein.	0.794
SKC38890.1	SKC75226.1	SAMN05660236_0064	SAMN05660236_3209	Tfp pilus assembly protein PilF.	Prepilin-type processing-associated H-X9-DG domain-containing protein; Manually curated.	0.811
SKC38890.1	SKC76876.1	SAMN05660236_0064	SAMN05660236_3479	Tfp pilus assembly protein PilF.	Molecular chaperone HtpG; Molecular chaperone. Has ATPase activity.	0.931
SKC38890.1	SKC78153.1	SAMN05660236_0064	SAMN05660236_3695	Tfp pilus assembly protein PilF.	WD domain-containing protein, G-beta repeat-containing protein.	0.668
SKC38890.1	SKC82030.1	SAMN05660236_0064	SAMN05660236_4073	Tfp pilus assembly protein PilF.	TolB amino-terminal domain-containing protein.	0.841
SKC38890.1	SKC82137.1	SAMN05660236_0064	SAMN05660236_4095	Tfp pilus assembly protein PilF.	Tetratricopeptide repeat-containing protein.	0.707
SKC38890.1	SKC82164.1	SAMN05660236_0064	SAMN05660236_4102	Tfp pilus assembly protein PilF.	Tfp pilus assembly protein PilF.	0.848

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