STRINGSTRING
SKC47811.1 SKC47811.1 priA priA SKC58927.1 SKC58927.1 SKC65402.1 SKC65402.1 secA secA SKC73675.1 SKC73675.1 recG recG SKC75090.1 SKC75090.1 SKC75127.1 SKC75127.1 mfd mfd SKC77085.1 SKC77085.1 SKC81316.1 SKC81316.1 SKC85025.1 SKC85025.1 SKC86387.1 SKC86387.1 SKC86734.1 SKC86734.1 SKC87813.1 SKC87813.1 SKC89294.1 SKC89294.1 SKC89302.1 SKC89302.1 uvrB uvrB SKC89783.1 SKC89783.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
SKC47811.1Predicted RNA methylase. (1721 aa)
priAReplication restart DNA helicase PriA; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily. (833 aa)
SKC58927.1ATP-dependent DNA helicase RecQ. (730 aa)
SKC65402.1Superfamily II DNA and RNA helicase. (441 aa)
secAPreprotein translocase subunit SecA; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane. (1121 aa)
SKC73675.1ATP-dependent RNA helicase RhlE; Belongs to the DEAD box helicase family. (465 aa)
recGATP-dependent DNA helicase RecG; Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y- DNA); Belongs to the helicase family. RecG subfamily. (697 aa)
SKC75090.1Superfamily II DNA or RNA helicase, SNF2 family. (981 aa)
SKC75127.1Superfamily II DNA and RNA helicase; Belongs to the DEAD box helicase family. (405 aa)
mfdTranscription-repair coupling factor (superfamily II helicase); Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily. (1125 aa)
SKC77085.1ATP-dependent DNA helicase RecQ. (730 aa)
SKC81316.1Superfamily II DNA or RNA helicase, SNF2 family. (976 aa)
SKC85025.1Type I restriction enzyme, R subunit. (956 aa)
SKC86387.1ATP-dependent helicase HrpB. (822 aa)
SKC86734.1ATP-dependent helicase Lhr and Lhr-like helicase. (816 aa)
SKC87813.1Superfamily II DNA or RNA helicase, SNF2 family. (984 aa)
SKC89294.1ATP-dependent DNA helicase RecQ. (639 aa)
SKC89302.1ATP-dependent RNA helicase DeaD; Belongs to the DEAD box helicase family. (584 aa)
uvrBExcinuclease ABC subunit B; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate [...] (674 aa)
SKC89783.1ATP-dependent RNA helicase RhlE; Belongs to the DEAD box helicase family. (420 aa)
Your Current Organism:
Ohtaekwangia koreensis
NCBI taxonomy Id: 688867
Other names: Bacteroidetes bacterium 3B-2, CCUG 58939, DSM 25262, KCTC 23018, O. koreensis, Ohtaekwangia koreensis Yoon et al. 2011, strain 3B-2
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