STRINGSTRING
TK0059 TK0059 TK0060 TK0060 TK0061 TK0061 TK0062 TK0062 TK0063 TK0063 TK0064 TK0064 TK0065 TK0065 TK0066 TK0066 TK0167 TK0167 TK0168 TK0168 TK0169 TK0169 TK1024 TK1024 TK1025 TK1025 TK1026 TK1026 TK1027 TK1027 TK1028 TK1028 TK1029 TK1029 TK1030 TK1030 TK1210 TK1210 TK1880 TK1880 TK1881 TK1881 TK1882 TK1882 TK1883 TK1883 TK1955 TK1955 TK1956 TK1956 TK1957 TK1957 TK1958 TK1958 carS carS TK2120 TK2120 TK2121 TK2121 TK2122 TK2122 TK2123 TK2123 vapC-11 vapC-11 TK2229 TK2229 TK2230 TK2230
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
TK0059CDP-alcohol phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family. (189 aa)
TK0060Hypothetical protein, conserved, DUF127 family; Specifically catalyzes the AdoMet-dependent 2'-O-ribose methylation of cytidine at position 56 in tRNAs; Belongs to the aTrm56 family. (180 aa)
TK0061Hypothetical protein, conserved. (532 aa)
TK0062Hypothetical protein, conserved, DUF62 family. (256 aa)
TK0063Nucleotidyltransferase, fused to N-terminal DNA-binding domain. (182 aa)
TK0064Hypothetical protein, conserved, DUF103 family. (126 aa)
TK0065Hypothetical protein, conserved. (66 aa)
TK0066Predicted nucleic acid-binding protein, containing PIN domain. (154 aa)
TK0167Hypothetical protein, conserved, radical SAM superfamily. (535 aa)
TK0168Predicted transcription regulator, Lrp/AsnC family. (77 aa)
TK0169Predicted transcription regulator, MarR family; Belongs to the GbsR family. (182 aa)
TK1024Hypothetical membrane protein. (430 aa)
TK1025Hypothetical protein, conserved, containing ATP/GTP-binding site motif A. (292 aa)
TK1026Geranylgeranylglyceryl diphosphate synthase; Prenyltransferase that catalyzes the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids; Belongs to the GGGP/HepGP synthase family. Group II subfamily. (252 aa)
TK1027Predicted nucleic acid-binding protein, containing PIN domain. (160 aa)
TK1028Hypothetical protein, conserved, DUF104 family. (67 aa)
TK1029Hypothetical protein, conserved, DUF123 family. (142 aa)
TK1030Hypothetical protein, conserved. (135 aa)
TK1210Transcription regulator, Lrp/AsnC family. (153 aa)
TK1880Archaeal succinyl-CoA synthetase (NDP forming), large subunit. (469 aa)
TK1881Transcription regulator, ArsR family. (193 aa)
TK1882Hypothetical protein, conserved, DUF211 family. (101 aa)
TK1883Transcription regulator, ArsR family. (185 aa)
TK1955Predicted transcription regulator, Lrp/AsnC family. (154 aa)
TK1956Hypothetical protein, conserved, containing ATP/GTP-binding site motif A; Polynucleotide kinase that can phosphorylate the 5'-hydroxyl groups of both single-stranded RNA (ssRNA) and single-stranded DNA (ssDNA). Exhibits a strong preference for ssRNA (By similarity). (351 aa)
TK19574-hydroxybenzoate octaprenyltransferase; Prenyltransferase that catalyzes the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C2 hydroxyl of (S)-3-O-geranylgeranylglyceryl phosphate (GGGP). This reaction is the second ether-bond-formation step in the biosynthesis of archaeal membrane lipids. (277 aa)
TK1958Hypothetical protein, conserved. (126 aa)
carSHypothetical membrane protein, conserved, DUF46 family; Catalyzes the formation of CDP-2,3-bis-(O-geranylgeranyl)-sn- glycerol (CDP-archaeol) from 2,3-bis-(O-geranylgeranyl)-sn-glycerol 1- phosphate (DGGGP) and CTP. This reaction is the third ether-bond- formation step in the biosynthesis of archaeal membrane lipids. (171 aa)
TK2120Hypothetical protein, conserved, containing DUF1511 family. (307 aa)
TK2121Hypothetical protein, conserved. (175 aa)
TK2122tRNA/rRNA cytosine-C5-methylase, NOL1/NOP2/Sun family, containing RNA-binding PUA domain; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. (383 aa)
TK2123Hypothetical membrane protien, conserved, UPF0104 family. (341 aa)
vapC-11Predicted nucleic acid-binding protein, containing PIN domain; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family. (128 aa)
TK2229Transcription regulator, SpoVT/AbrB family. (74 aa)
TK2230Hypothetical protein. (60 aa)
Your Current Organism:
Thermococcus kodakarensis
NCBI taxonomy Id: 69014
Other names: Pyrococcus sp. (strain KOD1), Pyrococcus sp. KOD1, T. kodakarensis KOD1, Thermococcus kodakaraensis KOD1, Thermococcus kodakarensis KOD1, Thermococcus kodakarensis str. KOD1, Thermococcus kodakarensis strain KOD1
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