STRINGSTRING
pol pol pyrF pyrF TK2093 TK2093 TK2089 TK2089 TK2088 TK2088 TK2080 TK2080 Pk-chiA Pk-chiA gdhA gdhA TK1094 TK1094 TK0895 TK0895
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
polDNA-directed DNA polymerase, family B; Intein encoded endonucleases are thought to mediate intein mobility by site-specific recombination initiated by endonuclease cleavage at the 'homing site' in gene that lack the intein. PI-PkoI recognizes 5'-GATTTAGATCCCTGTACC-3' and PI-PkoII recognizes 5'- CAGCTACTACGGTTAC-3'. (1671 aa)
pyrFOrotidine-5'-phosphate decarboxylase; Catalyzes the decarboxylation of orotidine 5'-monophosphate (OMP) to uridine 5'-monophosphate (UMP); Belongs to the OMP decarboxylase family. Type 1 subfamily. (213 aa)
TK2093Membrane bound hydrogenase, 4Fe-4S cluster-binding subunit. (143 aa)
TK2089Membrane bound hydrogenase, NiFe-hydrogenase small subunit. (176 aa)
TK2088Membrane bound hydrogenase, MbhI subunit. (118 aa)
TK2080Membrane bound hydrogenase, MbhA subunit. (167 aa)
Pk-chiAChitinase, containing dual catalytic domains. (1215 aa)
gdhAGlutamate dehydrogenase. (421 aa)
TK1094Alanine aminotransferase. (399 aa)
TK0895S-layer protein precursor. (612 aa)
Your Current Organism:
Thermococcus kodakarensis
NCBI taxonomy Id: 69014
Other names: Pyrococcus sp. (strain KOD1), Pyrococcus sp. KOD1, T. kodakarensis KOD1, Thermococcus kodakaraensis KOD1, Thermococcus kodakarensis KOD1, Thermococcus kodakarensis str. KOD1, Thermococcus kodakarensis strain KOD1
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