(5 nodes) UMP salvage network (Aspergillus aculeatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A1L9WJG1	Uncharacterized protein. (203 aa)
	A0A1L9WK10	Uridine kinase; Belongs to the uridine kinase family. (454 aa)
	A0A1L9WLU0	Uncharacterized protein. (227 aa)
	A0A1L9WJE6	Uncharacterized protein. (229 aa)
	A0A1L9WEH7	Uncharacterized protein. (248 aa)

Your Current Organism:

Aspergillus aculeatus

NCBI taxonomy Id: 690307
Other names: A. aculeatus ATCC 16872, Aspergillus aculeatus ATCC 16872

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1L9WEH7	A0A1L9WJE6	Uncharacterized protein.	Uncharacterized protein.	0.738
A0A1L9WEH7	A0A1L9WJG1	Uncharacterized protein.	Uncharacterized protein.	0.684
A0A1L9WEH7	A0A1L9WLU0	Uncharacterized protein.	Uncharacterized protein.	0.907
A0A1L9WJE6	A0A1L9WEH7	Uncharacterized protein.	Uncharacterized protein.	0.738
A0A1L9WJE6	A0A1L9WJG1	Uncharacterized protein.	Uncharacterized protein.	0.687
A0A1L9WJE6	A0A1L9WLU0	Uncharacterized protein.	Uncharacterized protein.	0.848
A0A1L9WJG1	A0A1L9WEH7	Uncharacterized protein.	Uncharacterized protein.	0.684
A0A1L9WJG1	A0A1L9WJE6	Uncharacterized protein.	Uncharacterized protein.	0.687
A0A1L9WJG1	A0A1L9WK10	Uncharacterized protein.	Uridine kinase; Belongs to the uridine kinase family.	0.750
A0A1L9WK10	A0A1L9WJG1	Uridine kinase; Belongs to the uridine kinase family.	Uncharacterized protein.	0.750
A0A1L9WK10	A0A1L9WLU0	Uridine kinase; Belongs to the uridine kinase family.	Uncharacterized protein.	0.889
A0A1L9WLU0	A0A1L9WEH7	Uncharacterized protein.	Uncharacterized protein.	0.907
A0A1L9WLU0	A0A1L9WJE6	Uncharacterized protein.	Uncharacterized protein.	0.848
A0A1L9WLU0	A0A1L9WK10	Uncharacterized protein.	Uridine kinase; Belongs to the uridine kinase family.	0.889