(13 nodes) Phosphoribosyltransferase domain network (Aspergillus aculeatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A1L9WEH7	Uncharacterized protein. (248 aa)
	A0A1L9WI65	Uncharacterized protein. (204 aa)
	A0A1L9WJ32	Pribosyltran domain-containing protein. (215 aa)
	A0A1L9WJE6	Uncharacterized protein. (229 aa)
	A0A1L9WJG1	Uncharacterized protein. (203 aa)
	A0A1L9WK10	Uridine kinase; Belongs to the uridine kinase family. (454 aa)
	A0A1L9WLU0	Uncharacterized protein. (227 aa)
	A0A1L9WN12	Amidophosphoribosyltransferase. (581 aa)
	A0A1L9WUL5	Pribosyltran_N domain-containing protein. (496 aa)
	A0A1L9WXH9	FAD-binding PCMH-type domain-containing protein. (1123 aa)
	A0A1L9X6Q8	Pribosyltran domain-containing protein. (238 aa)
	A0A1L9X753	Pribosyltran_N domain-containing protein. (320 aa)
	A0A1L9X9E5	Pribosyltran_N domain-containing protein. (429 aa)

Your Current Organism:

Aspergillus aculeatus

NCBI taxonomy Id: 690307
Other names: A. aculeatus ATCC 16872, Aspergillus aculeatus ATCC 16872

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1L9WEH7	A0A1L9WJE6	Uncharacterized protein.	Uncharacterized protein.	0.738
A0A1L9WEH7	A0A1L9WJG1	Uncharacterized protein.	Uncharacterized protein.	0.684
A0A1L9WEH7	A0A1L9WLU0	Uncharacterized protein.	Uncharacterized protein.	0.907
A0A1L9WEH7	A0A1L9X6Q8	Uncharacterized protein.	Pribosyltran domain-containing protein.	0.524
A0A1L9WI65	A0A1L9WJ32	Uncharacterized protein.	Pribosyltran domain-containing protein.	0.792
A0A1L9WI65	A0A1L9WN12	Uncharacterized protein.	Amidophosphoribosyltransferase.	0.431
A0A1L9WI65	A0A1L9WUL5	Uncharacterized protein.	Pribosyltran_N domain-containing protein.	0.555
A0A1L9WI65	A0A1L9WXH9	Uncharacterized protein.	FAD-binding PCMH-type domain-containing protein.	0.782
A0A1L9WI65	A0A1L9X6Q8	Uncharacterized protein.	Pribosyltran domain-containing protein.	0.604
A0A1L9WI65	A0A1L9X753	Uncharacterized protein.	Pribosyltran_N domain-containing protein.	0.558
A0A1L9WI65	A0A1L9X9E5	Uncharacterized protein.	Pribosyltran_N domain-containing protein.	0.558
A0A1L9WJ32	A0A1L9WI65	Pribosyltran domain-containing protein.	Uncharacterized protein.	0.792
A0A1L9WJ32	A0A1L9WN12	Pribosyltran domain-containing protein.	Amidophosphoribosyltransferase.	0.602
A0A1L9WJ32	A0A1L9WUL5	Pribosyltran domain-containing protein.	Pribosyltran_N domain-containing protein.	0.413
A0A1L9WJ32	A0A1L9X6Q8	Pribosyltran domain-containing protein.	Pribosyltran domain-containing protein.	0.683
A0A1L9WJ32	A0A1L9X753	Pribosyltran domain-containing protein.	Pribosyltran_N domain-containing protein.	0.413
A0A1L9WJ32	A0A1L9X9E5	Pribosyltran domain-containing protein.	Pribosyltran_N domain-containing protein.	0.413
A0A1L9WJE6	A0A1L9WEH7	Uncharacterized protein.	Uncharacterized protein.	0.738
A0A1L9WJE6	A0A1L9WJG1	Uncharacterized protein.	Uncharacterized protein.	0.687
A0A1L9WJE6	A0A1L9WLU0	Uncharacterized protein.	Uncharacterized protein.	0.848