(6 nodes) Endoplasmic reticulum exit site network (Sphaerulina musiva)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	M3AZ81_SPHMS	Beta-sandwich domain of Sec23/24. (1042 aa)
	M3BWU3_SPHMS	Sec23_trunk-domain-containing protein. (857 aa)
	M3C9T6_SPHMS	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily. (780 aa)
	M3CMA7_SPHMS	Protein transport protein sec16; Involved in the initiation of assembly of the COPII coat required for the formation of transport vesicles from the endoplasmic reticulum (ER) and the selection of cargo molecules. Also involved in autophagy; Belongs to the SEC16 family. (1907 aa)
	N1QGF6_SPHMS	GTP-binding protein; Belongs to the small GTPase superfamily. SAR1 family. (189 aa)
	N1QN22_SPHMS	WD40 repeat-like protein. (1286 aa)

Your Current Organism:

Sphaerulina musiva

NCBI taxonomy Id: 692275
Other names: Mycosphaerella populorum SO2202, S. musiva SO2202, Septoria musiva SO2202, Sphaerulina musiva SO2202

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
M3AZ81_SPHMS	M3BWU3_SPHMS	M3AZ81	M3BWU3	Beta-sandwich domain of Sec23/24.	Sec23_trunk-domain-containing protein.	0.999
M3AZ81_SPHMS	M3C9T6_SPHMS	M3AZ81	M3C9T6	Beta-sandwich domain of Sec23/24.	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.	0.999
M3AZ81_SPHMS	M3CMA7_SPHMS	M3AZ81	M3CMA7	Beta-sandwich domain of Sec23/24.	Protein transport protein sec16; Involved in the initiation of assembly of the COPII coat required for the formation of transport vesicles from the endoplasmic reticulum (ER) and the selection of cargo molecules. Also involved in autophagy; Belongs to the SEC16 family.	0.988
M3AZ81_SPHMS	N1QGF6_SPHMS	M3AZ81	N1QGF6	Beta-sandwich domain of Sec23/24.	GTP-binding protein; Belongs to the small GTPase superfamily. SAR1 family.	0.775
M3AZ81_SPHMS	N1QN22_SPHMS	M3AZ81	N1QN22	Beta-sandwich domain of Sec23/24.	WD40 repeat-like protein.	0.953
M3BWU3_SPHMS	M3AZ81_SPHMS	M3BWU3	M3AZ81	Sec23_trunk-domain-containing protein.	Beta-sandwich domain of Sec23/24.	0.999
M3BWU3_SPHMS	M3C9T6_SPHMS	M3BWU3	M3C9T6	Sec23_trunk-domain-containing protein.	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.	0.999
M3BWU3_SPHMS	M3CMA7_SPHMS	M3BWU3	M3CMA7	Sec23_trunk-domain-containing protein.	Protein transport protein sec16; Involved in the initiation of assembly of the COPII coat required for the formation of transport vesicles from the endoplasmic reticulum (ER) and the selection of cargo molecules. Also involved in autophagy; Belongs to the SEC16 family.	0.998
M3BWU3_SPHMS	N1QGF6_SPHMS	M3BWU3	N1QGF6	Sec23_trunk-domain-containing protein.	GTP-binding protein; Belongs to the small GTPase superfamily. SAR1 family.	0.953
M3BWU3_SPHMS	N1QN22_SPHMS	M3BWU3	N1QN22	Sec23_trunk-domain-containing protein.	WD40 repeat-like protein.	0.994
M3C9T6_SPHMS	M3AZ81_SPHMS	M3C9T6	M3AZ81	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.	Beta-sandwich domain of Sec23/24.	0.999
M3C9T6_SPHMS	M3BWU3_SPHMS	M3C9T6	M3BWU3	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.	Sec23_trunk-domain-containing protein.	0.999
M3C9T6_SPHMS	M3CMA7_SPHMS	M3C9T6	M3CMA7	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.	Protein transport protein sec16; Involved in the initiation of assembly of the COPII coat required for the formation of transport vesicles from the endoplasmic reticulum (ER) and the selection of cargo molecules. Also involved in autophagy; Belongs to the SEC16 family.	0.976
M3C9T6_SPHMS	N1QGF6_SPHMS	M3C9T6	N1QGF6	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.	GTP-binding protein; Belongs to the small GTPase superfamily. SAR1 family.	0.976
M3C9T6_SPHMS	N1QN22_SPHMS	M3C9T6	N1QN22	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.	WD40 repeat-like protein.	0.995
M3CMA7_SPHMS	M3AZ81_SPHMS	M3CMA7	M3AZ81	Protein transport protein sec16; Involved in the initiation of assembly of the COPII coat required for the formation of transport vesicles from the endoplasmic reticulum (ER) and the selection of cargo molecules. Also involved in autophagy; Belongs to the SEC16 family.	Beta-sandwich domain of Sec23/24.	0.988
M3CMA7_SPHMS	M3BWU3_SPHMS	M3CMA7	M3BWU3	Protein transport protein sec16; Involved in the initiation of assembly of the COPII coat required for the formation of transport vesicles from the endoplasmic reticulum (ER) and the selection of cargo molecules. Also involved in autophagy; Belongs to the SEC16 family.	Sec23_trunk-domain-containing protein.	0.998
M3CMA7_SPHMS	M3C9T6_SPHMS	M3CMA7	M3C9T6	Protein transport protein sec16; Involved in the initiation of assembly of the COPII coat required for the formation of transport vesicles from the endoplasmic reticulum (ER) and the selection of cargo molecules. Also involved in autophagy; Belongs to the SEC16 family.	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.	0.976
M3CMA7_SPHMS	N1QGF6_SPHMS	M3CMA7	N1QGF6	Protein transport protein sec16; Involved in the initiation of assembly of the COPII coat required for the formation of transport vesicles from the endoplasmic reticulum (ER) and the selection of cargo molecules. Also involved in autophagy; Belongs to the SEC16 family.	GTP-binding protein; Belongs to the small GTPase superfamily. SAR1 family.	0.911
M3CMA7_SPHMS	N1QN22_SPHMS	M3CMA7	N1QN22	Protein transport protein sec16; Involved in the initiation of assembly of the COPII coat required for the formation of transport vesicles from the endoplasmic reticulum (ER) and the selection of cargo molecules. Also involved in autophagy; Belongs to the SEC16 family.	WD40 repeat-like protein.	0.928