(38 nodes) Mixed, incl. Formation of Senescence-Associated Heterochromatin Foci (SAHF), and FRAS1-related extracellular matrix protein, N-terminal domain network (Gasterosteus aculeatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	G3N4K5_GASAC	Hira domain-containing protein. (154 aa)
	G3N6P7_GASAC	Protein HIRA; Required for replication-independent chromatin assembly and for the periodic repression of histone gene transcription during the cell cycle; Belongs to the WD repeat HIR1 family. (862 aa)
	G3N7D6_GASAC	Fras1 related extracellular matrix 1a. (2182 aa)
	G3N8N1_GASAC	Coagulation factor C homolog, cochlin (Limulus polyphemus). (387 aa)
	ENSGACP00000001763	annotation not available (154 aa)
	G3NA20_GASAC	Glutamine-rich 1. (783 aa)
	G3NA62_GASAC	BMP binding endothelial regulator. (609 aa)
	G3NFF5_GASAC	Phage_integrase domain-containing protein. (345 aa)
	G3NFL6_GASAC	Fras1 related extracellular matrix 1b. (2166 aa)
	G3NGC6_GASAC	Uncharacterized protein. (195 aa)
	G3NH83_GASAC	IMD domain-containing protein. (153 aa)
	G3NHN3_GASAC	Chromatin assembly factor 1, subunit B. (553 aa)
	G3NIR5_GASAC	EGF-like-domain, multiple 6. (531 aa)
	G3NK36_GASAC	Uncharacterized protein. (1216 aa)
	G3NMU0_GASAC	Tousled-like kinase 1a. (717 aa)
	G3NT54_GASAC	Protein kinase domain-containing protein. (774 aa)
	G3NTD7_GASAC	Nuclear autoantigenic sperm protein (histone-binding). (574 aa)
	G3P2X3_GASAC	Tousled-like kinase 2. (780 aa)
	G3P3T8_GASAC	Coiled-coil domain containing 80. (800 aa)
	G3P8A4_GASAC	Anti-silencing function 1Ba histone chaperone. (197 aa)
	G3PCW5_GASAC	FRAS1 related extracellular matrix 2b. (3069 aa)
	G3PEX0_GASAC	Uncharacterized protein. (226 aa)
	G3PEX9_GASAC	Uncharacterized protein. (166 aa)
	G3PFW6_GASAC	Calcineurin binding protein 1. (2186 aa)
	G3PN46_GASAC	Chromatin assembly factor 1, subunit A (p150). (496 aa)
	G3PP70_GASAC	Hira domain-containing protein. (324 aa)
	G3PP91_GASAC	Protein HIRA; Required for replication-independent chromatin assembly and for the periodic repression of histone gene transcription during the cell cycle; Belongs to the WD repeat HIR1 family. (1010 aa)
	G3PRX2_GASAC	Uncharacterized protein. (261 aa)
	G3PTU1_GASAC	Uncharacterized protein. (437 aa)
	G3PVT0_GASAC	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (367 aa)
	G3PYD4_GASAC	Nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor-like 1. (393 aa)
	G3PYS4_GASAC	Fras1 related extracellular matrix 3. (2988 aa)
	G3PZW7_GASAC	Nephronectin a. (605 aa)
	G3Q1M1_GASAC	LisH domain-containing protein. (255 aa)
	G3Q4V8_GASAC	Anti-silencing function 1Ba histone chaperone. (199 aa)
	G3Q680_GASAC	Transmembrane channel-like protein. (586 aa)
	G3Q7J3_GASAC	UBN_AB domain-containing protein. (435 aa)
	G3QBD0_GASAC	FRAS1 related extracellular matrix 2a. (3090 aa)

Your Current Organism:

Gasterosteus aculeatus

NCBI taxonomy Id: 69293
Other names: G. aculeatus, three spined stickleback, three-spined stickleback

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSGACP00000001763	G3N8N1_GASAC	ENSGACP00000001763	ENSGACP00000001667	annotation not available	Coagulation factor C homolog, cochlin (Limulus polyphemus).	0.529
ENSGACP00000001763	G3NA62_GASAC	ENSGACP00000001763	ENSGACP00000002205	annotation not available	BMP binding endothelial regulator.	0.541
ENSGACP00000001763	G3NFF5_GASAC	ENSGACP00000001763	ENSGACP00000004057	annotation not available	Phage_integrase domain-containing protein.	0.529
ENSGACP00000001763	G3NGC6_GASAC	ENSGACP00000001763	ENSGACP00000004381	annotation not available	Uncharacterized protein.	0.529
ENSGACP00000001763	G3NHN3_GASAC	ENSGACP00000001763	ENSGACP00000004842	annotation not available	Chromatin assembly factor 1, subunit B.	0.444
ENSGACP00000001763	G3NK36_GASAC	ENSGACP00000001763	ENSGACP00000005698	annotation not available	Uncharacterized protein.	0.529
ENSGACP00000001763	G3P3T8_GASAC	ENSGACP00000001763	ENSGACP00000012261	annotation not available	Coiled-coil domain containing 80.	0.533
ENSGACP00000001763	G3P8A4_GASAC	ENSGACP00000001763	ENSGACP00000013828	annotation not available	Anti-silencing function 1Ba histone chaperone.	0.902
ENSGACP00000001763	G3PCW5_GASAC	ENSGACP00000001763	ENSGACP00000015439	annotation not available	FRAS1 related extracellular matrix 2b.	0.529
ENSGACP00000001763	G3PEX0_GASAC	ENSGACP00000001763	ENSGACP00000016144	annotation not available	Uncharacterized protein.	0.529
ENSGACP00000001763	G3PEX9_GASAC	ENSGACP00000001763	ENSGACP00000016153	annotation not available	Uncharacterized protein.	0.532
ENSGACP00000001763	G3PFW6_GASAC	ENSGACP00000001763	ENSGACP00000016490	annotation not available	Calcineurin binding protein 1.	0.904
ENSGACP00000001763	G3PRX2_GASAC	ENSGACP00000001763	ENSGACP00000020358	annotation not available	Uncharacterized protein.	0.529
ENSGACP00000001763	G3PYS4_GASAC	ENSGACP00000001763	ENSGACP00000022764	annotation not available	Fras1 related extracellular matrix 3.	0.541
ENSGACP00000001763	G3Q1M1_GASAC	ENSGACP00000001763	ENSGACP00000023769	annotation not available	LisH domain-containing protein.	0.529
ENSGACP00000001763	G3Q4V8_GASAC	ENSGACP00000001763	ENSGACP00000024912	annotation not available	Anti-silencing function 1Ba histone chaperone.	0.904
ENSGACP00000001763	G3Q7J3_GASAC	ENSGACP00000001763	ENSGACP00000025853	annotation not available	UBN_AB domain-containing protein.	0.917
ENSGACP00000001763	G3QBD0_GASAC	ENSGACP00000001763	ENSGACP00000027196	annotation not available	FRAS1 related extracellular matrix 2a.	0.529
G3N4K5_GASAC	G3N8N1_GASAC	ENSGACP00000000225	ENSGACP00000001667	Hira domain-containing protein.	Coagulation factor C homolog, cochlin (Limulus polyphemus).	0.529
G3N4K5_GASAC	G3NA62_GASAC	ENSGACP00000000225	ENSGACP00000002205	Hira domain-containing protein.	BMP binding endothelial regulator.	0.529