25 items (Gasterosteus aculeatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	G3N4K0_GASAC	DEAD (Asp-Glu-Ala-Asp) box polypeptide 46. (1012 aa)
	G3N5K7_GASAC	Small nuclear ribonucleoprotein 70 (U1). (390 aa)
	LSM10	LSM10, U7 small nuclear RNA associated. (122 aa)
	G3NDR5_GASAC	Splicing factor 3b, subunit 3. (1218 aa)
	G3NG36_GASAC	Small nuclear ribonucleoprotein-associated protein. (238 aa)
	G3NI77_GASAC	Splicing factor 3b, subunit 4. (395 aa)
	G3NLV0_GASAC	PHD finger protein 5A. (111 aa)
	G3NLZ7_GASAC	Splicing factor 3b, subunit 6. (125 aa)
	SNRPC	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. SNRPC/U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. Belongs to the U1 [...] (149 aa)
	SNRPD1	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (119 aa)
	G3NSE6_GASAC	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...] (165 aa)
	G3NU46_GASAC	Small nuclear ribonucleoprotein Sm D2. (118 aa)
	G3NYT4_GASAC	Splicing factor 3a, subunit 3. (501 aa)
	G3P253_GASAC	Splicing factor 3b, subunit 1. (1312 aa)
	G3P5Y3_GASAC	Small nuclear ribonucleoprotein polypeptide A. (277 aa)
	G3P7W6_GASAC	Splicing factor 3B subunit 5; Belongs to the SF3B5 family. (86 aa)
	G3PA33_GASAC	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (92 aa)
	G3PDS4_GASAC	Splicing factor 3a, subunit 1. (785 aa)
	G3PIM5_GASAC	Small nuclear ribonucleoprotein polypeptide G. (43 aa)
	G3PLX6_GASAC	Small nuclear ribonucleoprotein polypeptide A. (294 aa)
	G3PR91_GASAC	Splicing factor 3a, subunit 2. (292 aa)
	NCBP1	Nuclear cap binding protein subunit 1. (810 aa)
	G3PZX4_GASAC	Small nuclear ribonucleoprotein Sm D3. (128 aa)
	G3Q5I4_GASAC	Splicing factor 3b, subunit 2. (655 aa)
	G3Q9D2_GASAC	Small nuclear ribonucleoprotein polypeptide F. (85 aa)

Your Current Organism:

Gasterosteus aculeatus

NCBI taxonomy Id: 69293
Other names: G. aculeatus, three spined stickleback, three-spined stickleback

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
G3N4K0_GASAC	G3N5K7_GASAC	ENSGACP00000000220	ENSGACP00000000580	DEAD (Asp-Glu-Ala-Asp) box polypeptide 46.	Small nuclear ribonucleoprotein 70 (U1).	0.817
G3N4K0_GASAC	G3NDR5_GASAC	ENSGACP00000000220	ENSGACP00000003465	DEAD (Asp-Glu-Ala-Asp) box polypeptide 46.	Splicing factor 3b, subunit 3.	0.997
G3N4K0_GASAC	G3NG36_GASAC	ENSGACP00000000220	ENSGACP00000004291	DEAD (Asp-Glu-Ala-Asp) box polypeptide 46.	Small nuclear ribonucleoprotein-associated protein.	0.947
G3N4K0_GASAC	G3NI77_GASAC	ENSGACP00000000220	ENSGACP00000005037	DEAD (Asp-Glu-Ala-Asp) box polypeptide 46.	Splicing factor 3b, subunit 4.	0.987
G3N4K0_GASAC	G3NLV0_GASAC	ENSGACP00000000220	ENSGACP00000006313	DEAD (Asp-Glu-Ala-Asp) box polypeptide 46.	PHD finger protein 5A.	0.997
G3N4K0_GASAC	G3NLZ7_GASAC	ENSGACP00000000220	ENSGACP00000006360	DEAD (Asp-Glu-Ala-Asp) box polypeptide 46.	Splicing factor 3b, subunit 6.	0.945
G3N4K0_GASAC	G3NSE6_GASAC	ENSGACP00000000220	ENSGACP00000008263	DEAD (Asp-Glu-Ala-Asp) box polypeptide 46.	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...]	0.981
G3N4K0_GASAC	G3NU46_GASAC	ENSGACP00000000220	ENSGACP00000008864	DEAD (Asp-Glu-Ala-Asp) box polypeptide 46.	Small nuclear ribonucleoprotein Sm D2.	0.982
G3N4K0_GASAC	G3NYT4_GASAC	ENSGACP00000000220	ENSGACP00000010505	DEAD (Asp-Glu-Ala-Asp) box polypeptide 46.	Splicing factor 3a, subunit 3.	0.998
G3N4K0_GASAC	G3P253_GASAC	ENSGACP00000000220	ENSGACP00000011676	DEAD (Asp-Glu-Ala-Asp) box polypeptide 46.	Splicing factor 3b, subunit 1.	0.998
G3N4K0_GASAC	G3P5Y3_GASAC	ENSGACP00000000220	ENSGACP00000013006	DEAD (Asp-Glu-Ala-Asp) box polypeptide 46.	Small nuclear ribonucleoprotein polypeptide A.	0.962
G3N4K0_GASAC	G3P7W6_GASAC	ENSGACP00000000220	ENSGACP00000013690	DEAD (Asp-Glu-Ala-Asp) box polypeptide 46.	Splicing factor 3B subunit 5; Belongs to the SF3B5 family.	0.998
G3N4K0_GASAC	G3PA33_GASAC	ENSGACP00000000220	ENSGACP00000014457	DEAD (Asp-Glu-Ala-Asp) box polypeptide 46.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.977
G3N4K0_GASAC	G3PDS4_GASAC	ENSGACP00000000220	ENSGACP00000015748	DEAD (Asp-Glu-Ala-Asp) box polypeptide 46.	Splicing factor 3a, subunit 1.	0.998
G3N4K0_GASAC	G3PIM5_GASAC	ENSGACP00000000220	ENSGACP00000017453	DEAD (Asp-Glu-Ala-Asp) box polypeptide 46.	Small nuclear ribonucleoprotein polypeptide G.	0.973
G3N4K0_GASAC	G3PLX6_GASAC	ENSGACP00000000220	ENSGACP00000018607	DEAD (Asp-Glu-Ala-Asp) box polypeptide 46.	Small nuclear ribonucleoprotein polypeptide A.	0.996
G3N4K0_GASAC	G3PR91_GASAC	ENSGACP00000000220	ENSGACP00000020126	DEAD (Asp-Glu-Ala-Asp) box polypeptide 46.	Splicing factor 3a, subunit 2.	0.998
G3N4K0_GASAC	G3PZX4_GASAC	ENSGACP00000000220	ENSGACP00000023164	DEAD (Asp-Glu-Ala-Asp) box polypeptide 46.	Small nuclear ribonucleoprotein Sm D3.	0.977
G3N4K0_GASAC	G3Q5I4_GASAC	ENSGACP00000000220	ENSGACP00000025140	DEAD (Asp-Glu-Ala-Asp) box polypeptide 46.	Splicing factor 3b, subunit 2.	0.992
G3N4K0_GASAC	G3Q9D2_GASAC	ENSGACP00000000220	ENSGACP00000026497	DEAD (Asp-Glu-Ala-Asp) box polypeptide 46.	Small nuclear ribonucleoprotein polypeptide F.	0.974