10 items (Gasterosteus aculeatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	G3NKU2_GASAC	Heterogeneous nuclear ribonucleoprotein A3. (361 aa)
	G3NLG7_GASAC	Heterogeneous nuclear ribonucleoprotein Ub. (819 aa)
	G3NXK6_GASAC	Heterogeneous nuclear ribonucleoprotein K. (439 aa)
	G3P4B9_GASAC	Uncharacterized protein. (388 aa)
	G3P7K2_GASAC	Heterogeneous nuclear ribonucleoprotein M. (654 aa)
	G3PTU4_GASAC	Uncharacterized protein. (209 aa)
	G3PUV4_GASAC	Heterogeneous nuclear ribonucleoprotein K, like. (415 aa)
	G3PYU0_GASAC	RNA binding motif protein X-linked. (396 aa)
	G3Q0U4_GASAC	RRM domain-containing protein. (326 aa)
	G3Q573_GASAC	RRM domain-containing protein. (240 aa)

Your Current Organism:

Gasterosteus aculeatus

NCBI taxonomy Id: 69293
Other names: G. aculeatus, three spined stickleback, three-spined stickleback

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
G3NKU2_GASAC	G3NLG7_GASAC	ENSGACP00000005955	ENSGACP00000006180	Heterogeneous nuclear ribonucleoprotein A3.	Heterogeneous nuclear ribonucleoprotein Ub.	0.914
G3NKU2_GASAC	G3NXK6_GASAC	ENSGACP00000005955	ENSGACP00000010075	Heterogeneous nuclear ribonucleoprotein A3.	Heterogeneous nuclear ribonucleoprotein K.	0.961
G3NKU2_GASAC	G3P4B9_GASAC	ENSGACP00000005955	ENSGACP00000012442	Heterogeneous nuclear ribonucleoprotein A3.	Uncharacterized protein.	0.857
G3NKU2_GASAC	G3P7K2_GASAC	ENSGACP00000005955	ENSGACP00000013576	Heterogeneous nuclear ribonucleoprotein A3.	Heterogeneous nuclear ribonucleoprotein M.	0.962
G3NKU2_GASAC	G3PTU4_GASAC	ENSGACP00000005955	ENSGACP00000021031	Heterogeneous nuclear ribonucleoprotein A3.	Uncharacterized protein.	0.884
G3NKU2_GASAC	G3PUV4_GASAC	ENSGACP00000005955	ENSGACP00000021391	Heterogeneous nuclear ribonucleoprotein A3.	Heterogeneous nuclear ribonucleoprotein K, like.	0.961
G3NKU2_GASAC	G3PYU0_GASAC	ENSGACP00000005955	ENSGACP00000022780	Heterogeneous nuclear ribonucleoprotein A3.	RNA binding motif protein X-linked.	0.913
G3NKU2_GASAC	G3Q0U4_GASAC	ENSGACP00000005955	ENSGACP00000023489	Heterogeneous nuclear ribonucleoprotein A3.	RRM domain-containing protein.	0.934
G3NKU2_GASAC	G3Q573_GASAC	ENSGACP00000005955	ENSGACP00000025029	Heterogeneous nuclear ribonucleoprotein A3.	RRM domain-containing protein.	0.934
G3NLG7_GASAC	G3NKU2_GASAC	ENSGACP00000006180	ENSGACP00000005955	Heterogeneous nuclear ribonucleoprotein Ub.	Heterogeneous nuclear ribonucleoprotein A3.	0.914
G3NLG7_GASAC	G3NXK6_GASAC	ENSGACP00000006180	ENSGACP00000010075	Heterogeneous nuclear ribonucleoprotein Ub.	Heterogeneous nuclear ribonucleoprotein K.	0.939
G3NLG7_GASAC	G3P4B9_GASAC	ENSGACP00000006180	ENSGACP00000012442	Heterogeneous nuclear ribonucleoprotein Ub.	Uncharacterized protein.	0.916
G3NLG7_GASAC	G3P7K2_GASAC	ENSGACP00000006180	ENSGACP00000013576	Heterogeneous nuclear ribonucleoprotein Ub.	Heterogeneous nuclear ribonucleoprotein M.	0.959
G3NLG7_GASAC	G3PTU4_GASAC	ENSGACP00000006180	ENSGACP00000021031	Heterogeneous nuclear ribonucleoprotein Ub.	Uncharacterized protein.	0.885
G3NLG7_GASAC	G3PUV4_GASAC	ENSGACP00000006180	ENSGACP00000021391	Heterogeneous nuclear ribonucleoprotein Ub.	Heterogeneous nuclear ribonucleoprotein K, like.	0.936
G3NLG7_GASAC	G3PYU0_GASAC	ENSGACP00000006180	ENSGACP00000022780	Heterogeneous nuclear ribonucleoprotein Ub.	RNA binding motif protein X-linked.	0.899
G3NLG7_GASAC	G3Q0U4_GASAC	ENSGACP00000006180	ENSGACP00000023489	Heterogeneous nuclear ribonucleoprotein Ub.	RRM domain-containing protein.	0.916
G3NLG7_GASAC	G3Q573_GASAC	ENSGACP00000006180	ENSGACP00000025029	Heterogeneous nuclear ribonucleoprotein Ub.	RRM domain-containing protein.	0.912
G3NXK6_GASAC	G3NKU2_GASAC	ENSGACP00000010075	ENSGACP00000005955	Heterogeneous nuclear ribonucleoprotein K.	Heterogeneous nuclear ribonucleoprotein A3.	0.961
G3NXK6_GASAC	G3NLG7_GASAC	ENSGACP00000010075	ENSGACP00000006180	Heterogeneous nuclear ribonucleoprotein K.	Heterogeneous nuclear ribonucleoprotein Ub.	0.939