14 items (Gasterosteus aculeatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	G3PZ65_GASAC	Polycystic kidney disease 2. (903 aa)
	MYO1D	Myosin ID; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (1016 aa)
	G3NI67_GASAC	Nephronophthisis 3. (1305 aa)
	G3NKL4_GASAC	Forkhead box J1b. (451 aa)
	VDR	Vitamin D receptor. (420 aa)
	G3NT59_GASAC	Cordon-bleu WH2 repeat protein. (1330 aa)
	G3NWN6_GASAC	Dynein assembly factor 1, axonemal. (495 aa)
	G3NY23_GASAC	Nipped-B protein. (2557 aa)
	G3NZ08_GASAC	Vitamin D receptor b. (426 aa)
	G3PPV4_GASAC	Fork-head domain-containing protein. (411 aa)
	G3PTC3_GASAC	Leucine rich repeat containing 6. (187 aa)
	G3PX27_GASAC	T-box transcription factor 5a. (525 aa)
	G3PXA1_GASAC	Nipped-B protein. (2608 aa)
	G3Q2J0_GASAC	Coiled-coil domain containing 40. (886 aa)

Your Current Organism:

Gasterosteus aculeatus

NCBI taxonomy Id: 69293
Other names: G. aculeatus, three spined stickleback, three-spined stickleback

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
G3NWN6_GASAC	G3PTC3_GASAC	ENSGACP00000009755	ENSGACP00000020859	Dynein assembly factor 1, axonemal.	Leucine rich repeat containing 6.	0.520
G3NWN6_GASAC	G3Q2J0_GASAC	ENSGACP00000009755	ENSGACP00000024089	Dynein assembly factor 1, axonemal.	Coiled-coil domain containing 40.	0.582
G3PTC3_GASAC	G3NWN6_GASAC	ENSGACP00000020859	ENSGACP00000009755	Leucine rich repeat containing 6.	Dynein assembly factor 1, axonemal.	0.520
G3PTC3_GASAC	G3Q2J0_GASAC	ENSGACP00000020859	ENSGACP00000024089	Leucine rich repeat containing 6.	Coiled-coil domain containing 40.	0.587
G3Q2J0_GASAC	G3NWN6_GASAC	ENSGACP00000024089	ENSGACP00000009755	Coiled-coil domain containing 40.	Dynein assembly factor 1, axonemal.	0.582
G3Q2J0_GASAC	G3PTC3_GASAC	ENSGACP00000024089	ENSGACP00000020859	Coiled-coil domain containing 40.	Leucine rich repeat containing 6.	0.587