31 items (Gasterosteus aculeatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	G3Q530_GASAC	SPT16 homolog, facilitates chromatin remodeling subunit. (1040 aa)
	G3QB56_GASAC	Transcription elongation factor spt6; Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII). Belongs to the SPT6 family. (1720 aa)
	G3PYF9_GASAC	Transcription elongation factor A (SII), 1. (311 aa)
	G3PVX8_GASAC	Uncharacterized protein. (621 aa)
	CDC73	CDC73_N domain-containing protein. (277 aa)
	G3PUG5_GASAC	Cell division cycle 73, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae). (530 aa)
	G3PSY3_GASAC	CTR9 homolog, Paf1/RNA polymerase II complex component. (1160 aa)
	G3PS50_GASAC	PCI domain containing 2. (140 aa)
	G3PQA7_GASAC	LEO1 homolog, Paf1/RNA polymerase II complex component. (664 aa)
	G3PK45_GASAC	Elongin B. (119 aa)
	G3PGP0_GASAC	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (537 aa)
	G3PGD4_GASAC	Elongation factor RNA polymerase II. (681 aa)
	G3PEW6_GASAC	RTF1 homolog, Paf1/RNA polymerase II complex component. (677 aa)
	G3PDV6_GASAC	Adhesion regulating molecule 1. (405 aa)
	G3P9Q5_GASAC	PAF1 homolog, Paf1/RNA polymerase II complex component. (527 aa)
	G3P9J2_GASAC	Si:ch211-13k12.2. (604 aa)
	G3P8F4_GASAC	Transcription elongation factor A (SII), 2. (302 aa)
	G3P6I2_GASAC	Uncharacterized protein. (597 aa)
	G3P2E8_GASAC	Elongation factor, RNA polymerase II, 2. (670 aa)
	G3P1H7_GASAC	WW domain-containing protein. (736 aa)
	G3NWS8_GASAC	WD repeat domain 61. (305 aa)
	G3NWE4_GASAC	Transcription elongation factor A (SII), 3. (411 aa)
	ELOB	Elongin B. (119 aa)
	G3NU38_GASAC	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (126 aa)
	ELOF1	Transcription elongation factor 1 homolog; Transcription elongation factor implicated in the maintenance of proper chromatin structure in actively transcribed regions. Belongs to the ELOF1 family. (83 aa)
	G3NSU4_GASAC	Elongin A, like. (597 aa)
	ENY2	Transcription and mRNA export factor ENY2; Involved in mRNA export coupled transcription activation by association with both the TREX-2 and the SAGA complexes. The transcription regulatory histone acetylation (HAT) complex SAGA is a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates to a subcomplex that specifically deubiquitinates histones. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription. The TREX-2 complex [...] (95 aa)
	G3NMM4_GASAC	Cyclin-dependent kinase 13. (1304 aa)
	G3NMH3_GASAC	Transcription elongation factor SPT5. (1073 aa)
	G3NBL6_GASAC	Elongin A. (641 aa)
	G3N4M1_GASAC	PCI domain containing 2. (227 aa)

Your Current Organism:

Gasterosteus aculeatus

NCBI taxonomy Id: 69293
Other names: G. aculeatus, three spined stickleback, three-spined stickleback

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CDC73	ELOB	ENSGACP00000021258	ENSGACP00000009572	CDC73_N domain-containing protein.	Elongin B.	0.815
CDC73	ELOF1	ENSGACP00000021258	ENSGACP00000008517	CDC73_N domain-containing protein.	Transcription elongation factor 1 homolog; Transcription elongation factor implicated in the maintenance of proper chromatin structure in actively transcribed regions. Belongs to the ELOF1 family.	0.835
CDC73	G3NBL6_GASAC	ENSGACP00000021258	ENSGACP00000002713	CDC73_N domain-containing protein.	Elongin A.	0.834
CDC73	G3NMH3_GASAC	ENSGACP00000021258	ENSGACP00000006536	CDC73_N domain-containing protein.	Transcription elongation factor SPT5.	0.960
CDC73	G3NMM4_GASAC	ENSGACP00000021258	ENSGACP00000006587	CDC73_N domain-containing protein.	Cyclin-dependent kinase 13.	0.786
CDC73	G3NSU4_GASAC	ENSGACP00000021258	ENSGACP00000008412	CDC73_N domain-containing protein.	Elongin A, like.	0.834
CDC73	G3NU38_GASAC	ENSGACP00000021258	ENSGACP00000008856	CDC73_N domain-containing protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.923
CDC73	G3NWE4_GASAC	ENSGACP00000021258	ENSGACP00000009663	CDC73_N domain-containing protein.	Transcription elongation factor A (SII), 3.	0.800
CDC73	G3NWS8_GASAC	ENSGACP00000021258	ENSGACP00000009797	CDC73_N domain-containing protein.	WD repeat domain 61.	0.982
CDC73	G3P1H7_GASAC	ENSGACP00000021258	ENSGACP00000011450	CDC73_N domain-containing protein.	WW domain-containing protein.	0.634
CDC73	G3P8F4_GASAC	ENSGACP00000021258	ENSGACP00000013878	CDC73_N domain-containing protein.	Transcription elongation factor A (SII), 2.	0.801
CDC73	G3P9Q5_GASAC	ENSGACP00000021258	ENSGACP00000014329	CDC73_N domain-containing protein.	PAF1 homolog, Paf1/RNA polymerase II complex component.	0.989
CDC73	G3PEW6_GASAC	ENSGACP00000021258	ENSGACP00000016140	CDC73_N domain-containing protein.	RTF1 homolog, Paf1/RNA polymerase II complex component.	0.978
CDC73	G3PGP0_GASAC	ENSGACP00000021258	ENSGACP00000016765	CDC73_N domain-containing protein.	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	0.468
CDC73	G3PK45_GASAC	ENSGACP00000021258	ENSGACP00000017975	CDC73_N domain-containing protein.	Elongin B.	0.814
CDC73	G3PQA7_GASAC	ENSGACP00000021258	ENSGACP00000019792	CDC73_N domain-containing protein.	LEO1 homolog, Paf1/RNA polymerase II complex component.	0.999
CDC73	G3PSY3_GASAC	ENSGACP00000021258	ENSGACP00000020719	CDC73_N domain-containing protein.	CTR9 homolog, Paf1/RNA polymerase II complex component.	0.990
CDC73	G3PYF9_GASAC	ENSGACP00000021258	ENSGACP00000022649	CDC73_N domain-containing protein.	Transcription elongation factor A (SII), 1.	0.800
CDC73	G3Q530_GASAC	ENSGACP00000021258	ENSGACP00000024986	CDC73_N domain-containing protein.	SPT16 homolog, facilitates chromatin remodeling subunit.	0.989
CDC73	G3QB56_GASAC	ENSGACP00000021258	ENSGACP00000027122	CDC73_N domain-containing protein.	Transcription elongation factor spt6; Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII). Belongs to the SPT6 family.	0.950