(35 nodes) Proteasome core complex, beta-subunit complex network (Gasterosteus aculeatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	G3PUM8_GASAC	Proteasome subunit beta. (237 aa)
	G3Q285_GASAC	Proteasome subunit beta. (205 aa)
	G3Q2W4_GASAC	Proteasome subunit beta. (277 aa)
	G3N4H0_GASAC	Proteasome subunit beta. (274 aa)
	ENSGACP00000000189	Proteasome 20S subunit beta 12. (217 aa)
	ENSGACP00000000188	Proteasome 20S subunit beta 9a. (216 aa)
	ENSGACP00000000183	Proteasome 20S subunit beta 8A. (275 aa)
	G3N4G2_GASAC	Proteasome subunit beta. (274 aa)
	ENSGACP00000000181	Proteasome 20S subunit beta 12. (217 aa)
	G3N4G8_GASAC	Proteasome subunit beta. (216 aa)
	G3N4F5_GASAC	Proteasome subunit beta. (275 aa)
	G3N4F2_GASAC	Proteasome subunit beta. (246 aa)
	G3N4F1_GASAC	Proteasome subunit beta 12. (217 aa)
	G3N4F0_GASAC	Proteasome subunit beta. (216 aa)
	G3N4E8_GASAC	Uncharacterized protein. (240 aa)
	G3N4D2_GASAC	Proteasome subunit beta. (276 aa)
	G3N8Q6_GASAC	Proteasome subunit beta. (275 aa)
	G3N4C1_GASAC	Proteasome subunit beta. (238 aa)
	G3N4G9_GASAC	Proteasome subunit beta 12. (217 aa)
	G3N4B7_GASAC	Proteasome subunit beta. (224 aa)
	G3Q3S9_GASAC	Proteasome subunit beta. (281 aa)
	G3N4H1_GASAC	Proteasome subunit beta. (275 aa)
	G3N4B5_GASAC	Proteasome subunit beta. (216 aa)
	ENSGACP00000000193	Proteasome 20S subunit beta 12. (217 aa)
	G3N4H5_GASAC	Proteasome subunit beta. (274 aa)
	G3N4H6_GASAC	Proteasome subunit beta. (275 aa)
	G3N853_GASAC	Proteasome subunit beta. (235 aa)
	G3N8R0_GASAC	Proteasome subunit beta. (277 aa)
	G3N8R2_GASAC	Proteasome subunit beta. (274 aa)
	G3NAA9_GASAC	Proteasome subunit beta. (268 aa)
	G3NAN6_GASAC	Uncharacterized protein. (245 aa)
	G3NB47_GASAC	Proteasome subunit beta. (279 aa)
	G3NDU6_GASAC	Proteasome subunit beta 2. (119 aa)
	G3P674_GASAC	Proteasome subunit beta; Belongs to the peptidase T1B family. (267 aa)
	G3PMH5_GASAC	Proteasome subunit beta. (274 aa)

Your Current Organism:

Gasterosteus aculeatus

NCBI taxonomy Id: 69293
Other names: G. aculeatus, three spined stickleback, three-spined stickleback

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSGACP00000000181	ENSGACP00000000183	ENSGACP00000000181	ENSGACP00000000183	Proteasome 20S subunit beta 12.	Proteasome 20S subunit beta 8A.	0.924
ENSGACP00000000181	ENSGACP00000000188	ENSGACP00000000181	ENSGACP00000000188	Proteasome 20S subunit beta 12.	Proteasome 20S subunit beta 9a.	0.490
ENSGACP00000000181	ENSGACP00000000189	ENSGACP00000000181	ENSGACP00000000189	Proteasome 20S subunit beta 12.	Proteasome 20S subunit beta 12.	0.609
ENSGACP00000000181	ENSGACP00000000193	ENSGACP00000000181	ENSGACP00000000193	Proteasome 20S subunit beta 12.	Proteasome 20S subunit beta 12.	0.579
ENSGACP00000000181	G3N4B5_GASAC	ENSGACP00000000181	ENSGACP00000000192	Proteasome 20S subunit beta 12.	Proteasome subunit beta.	0.488
ENSGACP00000000181	G3N4B7_GASAC	ENSGACP00000000181	ENSGACP00000000137	Proteasome 20S subunit beta 12.	Proteasome subunit beta.	0.598
ENSGACP00000000181	G3N4C1_GASAC	ENSGACP00000000181	ENSGACP00000000141	Proteasome 20S subunit beta 12.	Proteasome subunit beta.	0.941
ENSGACP00000000181	G3N4D2_GASAC	ENSGACP00000000181	ENSGACP00000000152	Proteasome 20S subunit beta 12.	Proteasome subunit beta.	0.920
ENSGACP00000000181	G3N4E8_GASAC	ENSGACP00000000181	ENSGACP00000000168	Proteasome 20S subunit beta 12.	Uncharacterized protein.	0.928
ENSGACP00000000181	G3N4F0_GASAC	ENSGACP00000000181	ENSGACP00000000170	Proteasome 20S subunit beta 12.	Proteasome subunit beta.	0.500
ENSGACP00000000181	G3N4F1_GASAC	ENSGACP00000000181	ENSGACP00000000171	Proteasome 20S subunit beta 12.	Proteasome subunit beta 12.	0.588
ENSGACP00000000181	G3N4F2_GASAC	ENSGACP00000000181	ENSGACP00000000172	Proteasome 20S subunit beta 12.	Proteasome subunit beta.	0.944
ENSGACP00000000181	G3N4F5_GASAC	ENSGACP00000000181	ENSGACP00000000175	Proteasome 20S subunit beta 12.	Proteasome subunit beta.	0.927
ENSGACP00000000181	G3N4G2_GASAC	ENSGACP00000000181	ENSGACP00000000182	Proteasome 20S subunit beta 12.	Proteasome subunit beta.	0.937
ENSGACP00000000181	G3N4G8_GASAC	ENSGACP00000000181	ENSGACP00000000180	Proteasome 20S subunit beta 12.	Proteasome subunit beta.	0.496
ENSGACP00000000181	G3N4H0_GASAC	ENSGACP00000000181	ENSGACP00000000190	Proteasome 20S subunit beta 12.	Proteasome subunit beta.	0.944
ENSGACP00000000181	G3N4H1_GASAC	ENSGACP00000000181	ENSGACP00000000191	Proteasome 20S subunit beta 12.	Proteasome subunit beta.	0.928
ENSGACP00000000181	G3N4H5_GASAC	ENSGACP00000000181	ENSGACP00000000195	Proteasome 20S subunit beta 12.	Proteasome subunit beta.	0.943
ENSGACP00000000181	G3N4H6_GASAC	ENSGACP00000000181	ENSGACP00000000196	Proteasome 20S subunit beta 12.	Proteasome subunit beta.	0.927
ENSGACP00000000181	G3N853_GASAC	ENSGACP00000000181	ENSGACP00000001487	Proteasome 20S subunit beta 12.	Proteasome subunit beta.	0.873