(19 nodes) Protein localization to cell surface network (Gasterosteus aculeatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	G3NBU9_GASAC	Vinculin b. (1065 aa)
	PRRT1	Proline rich transmembrane protein 1. (234 aa)
	G3NQU3_GASAC	Uncharacterized protein. (185 aa)
	G3NTN2_GASAC	RIC3 domain-containing protein. (229 aa)
	G3NU32_GASAC	Vinculin a. (1127 aa)
	GGA1	Golgi associated, gamma adaptin ear containing, ARF binding protein 1. (638 aa)
	G3NYY9_GASAC	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family. (175 aa)
	G3PF53_GASAC	Golgi associated, gamma adaptin ear containing, ARF binding protein 3b. (747 aa)
	G3PGY1_GASAC	ADP-ribosylation factor 6a; Belongs to the small GTPase superfamily. Arf family. (182 aa)
	G3PMZ4_GASAC	Epithelial membrane protein 2. (96 aa)
	G3PPP5_GASAC	Unc-50 homolog (C. elegans). (257 aa)
	RIC3	RIC3 acetylcholine receptor chaperone. (358 aa)
	G3PW46_GASAC	GPI-anchor transamidase; Mediates GPI anchoring in the endoplasmic reticulum, by replacing a protein's C-terminal GPI attachment signal peptide with a pre-assembled GPI. During this transamidation reaction, the GPI transamidase forms a carbonyl intermediate with the substrate protein. Belongs to the peptidase C13 family. (396 aa)
	ASTN2	Astrotactin 2. (1303 aa)
	G3PX48_GASAC	Fibroblast growth factor; Belongs to the heparin-binding growth factors family. (202 aa)
	G3Q612_GASAC	Uncharacterized protein. (628 aa)
	G3Q6W4_GASAC	Golgi associated, gamma adaptin ear containing, ARF binding protein 3a. (731 aa)
	G3Q7F4_GASAC	Uncharacterized protein. (702 aa)
	G3Q9W2_GASAC	Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family. (357 aa)

Your Current Organism:

Gasterosteus aculeatus

NCBI taxonomy Id: 69293
Other names: G. aculeatus, three spined stickleback, three-spined stickleback

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
G3NBU9_GASAC	G3NYY9_GASAC	ENSGACP00000002797	ENSGACP00000010560	Vinculin b.	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.	0.412
G3NBU9_GASAC	G3PGY1_GASAC	ENSGACP00000002797	ENSGACP00000016856	Vinculin b.	ADP-ribosylation factor 6a; Belongs to the small GTPase superfamily. Arf family.	0.412
G3NTN2_GASAC	G3PPP5_GASAC	ENSGACP00000008700	ENSGACP00000019580	RIC3 domain-containing protein.	Unc-50 homolog (C. elegans).	0.593
G3NU32_GASAC	G3NYY9_GASAC	ENSGACP00000008850	ENSGACP00000010560	Vinculin a.	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.	0.412
G3NU32_GASAC	G3PGY1_GASAC	ENSGACP00000008850	ENSGACP00000016856	Vinculin a.	ADP-ribosylation factor 6a; Belongs to the small GTPase superfamily. Arf family.	0.412
G3NYY9_GASAC	G3NBU9_GASAC	ENSGACP00000010560	ENSGACP00000002797	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.	Vinculin b.	0.412
G3NYY9_GASAC	G3NU32_GASAC	ENSGACP00000010560	ENSGACP00000008850	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.	Vinculin a.	0.412
G3NYY9_GASAC	G3PF53_GASAC	ENSGACP00000010560	ENSGACP00000016227	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.	Golgi associated, gamma adaptin ear containing, ARF binding protein 3b.	0.898
G3NYY9_GASAC	G3Q612_GASAC	ENSGACP00000010560	ENSGACP00000025318	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.	Uncharacterized protein.	0.530
G3NYY9_GASAC	G3Q6W4_GASAC	ENSGACP00000010560	ENSGACP00000025624	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.	Golgi associated, gamma adaptin ear containing, ARF binding protein 3a.	0.898
G3NYY9_GASAC	G3Q7F4_GASAC	ENSGACP00000010560	ENSGACP00000025814	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.	Uncharacterized protein.	0.530
G3NYY9_GASAC	GGA1	ENSGACP00000010560	ENSGACP00000009733	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.	Golgi associated, gamma adaptin ear containing, ARF binding protein 1.	0.530
G3PF53_GASAC	G3NYY9_GASAC	ENSGACP00000016227	ENSGACP00000010560	Golgi associated, gamma adaptin ear containing, ARF binding protein 3b.	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.	0.898
G3PF53_GASAC	G3PGY1_GASAC	ENSGACP00000016227	ENSGACP00000016856	Golgi associated, gamma adaptin ear containing, ARF binding protein 3b.	ADP-ribosylation factor 6a; Belongs to the small GTPase superfamily. Arf family.	0.898
G3PF53_GASAC	G3Q612_GASAC	ENSGACP00000016227	ENSGACP00000025318	Golgi associated, gamma adaptin ear containing, ARF binding protein 3b.	Uncharacterized protein.	0.857
G3PF53_GASAC	G3Q7F4_GASAC	ENSGACP00000016227	ENSGACP00000025814	Golgi associated, gamma adaptin ear containing, ARF binding protein 3b.	Uncharacterized protein.	0.912
G3PF53_GASAC	GGA1	ENSGACP00000016227	ENSGACP00000009733	Golgi associated, gamma adaptin ear containing, ARF binding protein 3b.	Golgi associated, gamma adaptin ear containing, ARF binding protein 1.	0.896
G3PGY1_GASAC	G3NBU9_GASAC	ENSGACP00000016856	ENSGACP00000002797	ADP-ribosylation factor 6a; Belongs to the small GTPase superfamily. Arf family.	Vinculin b.	0.412
G3PGY1_GASAC	G3NU32_GASAC	ENSGACP00000016856	ENSGACP00000008850	ADP-ribosylation factor 6a; Belongs to the small GTPase superfamily. Arf family.	Vinculin a.	0.412
G3PGY1_GASAC	G3PF53_GASAC	ENSGACP00000016856	ENSGACP00000016227	ADP-ribosylation factor 6a; Belongs to the small GTPase superfamily. Arf family.	Golgi associated, gamma adaptin ear containing, ARF binding protein 3b.	0.898