(15 nodes) Wound healing, spreading of cells network (Gasterosteus aculeatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	G3P4W2_GASAC	Uncharacterized protein. (327 aa)
	G3NQ93_GASAC	Uncharacterized protein. (193 aa)
	G3NU51_GASAC	Cellular communication network factor 1. (376 aa)
	G3P2F0_GASAC	ADAM metallopeptidase domain 17a. (859 aa)
	G3N8D5_GASAC	Uncharacterized protein. (191 aa)
	G3N9B2_GASAC	ADAM metallopeptidase domain 17b. (817 aa)
	G3Q1Y5_GASAC	Uncharacterized protein. (220 aa)
	G3PBZ4_GASAC	Link domain-containing protein. (226 aa)
	G3PVM2_GASAC	Rho GTPase activating protein 24. (780 aa)
	G3P6B8_GASAC	Uncharacterized protein. (193 aa)
	RHOB	Ras homolog family member B. (196 aa)
	G3P4Z8_GASAC	Uncharacterized protein. (193 aa)
	G3NHG5_GASAC	Uncharacterized protein. (206 aa)
	G3NPC4_GASAC	Ras homolog family member Cb. (193 aa)
	G3Q321_GASAC	Heparin-binding EGF-like growth factor a. (207 aa)

Your Current Organism:

Gasterosteus aculeatus

NCBI taxonomy Id: 69293
Other names: G. aculeatus, three spined stickleback, three-spined stickleback

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
G3N8D5_GASAC	G3P6B8_GASAC	ENSGACP00000001569	ENSGACP00000013141	Uncharacterized protein.	Uncharacterized protein.	0.604
G3N8D5_GASAC	G3PBZ4_GASAC	ENSGACP00000001569	ENSGACP00000015118	Uncharacterized protein.	Link domain-containing protein.	0.571
G3N8D5_GASAC	G3PVM2_GASAC	ENSGACP00000001569	ENSGACP00000021661	Uncharacterized protein.	Rho GTPase activating protein 24.	0.618
G3N8D5_GASAC	G3Q1Y5_GASAC	ENSGACP00000001569	ENSGACP00000023884	Uncharacterized protein.	Uncharacterized protein.	0.618
G3N8D5_GASAC	G3Q321_GASAC	ENSGACP00000001569	ENSGACP00000024270	Uncharacterized protein.	Heparin-binding EGF-like growth factor a.	0.474
G3N9B2_GASAC	G3Q321_GASAC	ENSGACP00000001902	ENSGACP00000024270	ADAM metallopeptidase domain 17b.	Heparin-binding EGF-like growth factor a.	0.720
G3NHG5_GASAC	G3P6B8_GASAC	ENSGACP00000004773	ENSGACP00000013141	Uncharacterized protein.	Uncharacterized protein.	0.604
G3NHG5_GASAC	G3PBZ4_GASAC	ENSGACP00000004773	ENSGACP00000015118	Uncharacterized protein.	Link domain-containing protein.	0.571
G3NHG5_GASAC	G3PVM2_GASAC	ENSGACP00000004773	ENSGACP00000021661	Uncharacterized protein.	Rho GTPase activating protein 24.	0.618
G3NHG5_GASAC	G3Q1Y5_GASAC	ENSGACP00000004773	ENSGACP00000023884	Uncharacterized protein.	Uncharacterized protein.	0.618
G3NHG5_GASAC	G3Q321_GASAC	ENSGACP00000004773	ENSGACP00000024270	Uncharacterized protein.	Heparin-binding EGF-like growth factor a.	0.476
G3NPC4_GASAC	G3P6B8_GASAC	ENSGACP00000007188	ENSGACP00000013141	Ras homolog family member Cb.	Uncharacterized protein.	0.604
G3NPC4_GASAC	G3PBZ4_GASAC	ENSGACP00000007188	ENSGACP00000015118	Ras homolog family member Cb.	Link domain-containing protein.	0.571
G3NPC4_GASAC	G3PVM2_GASAC	ENSGACP00000007188	ENSGACP00000021661	Ras homolog family member Cb.	Rho GTPase activating protein 24.	0.618
G3NPC4_GASAC	G3Q1Y5_GASAC	ENSGACP00000007188	ENSGACP00000023884	Ras homolog family member Cb.	Uncharacterized protein.	0.619
G3NPC4_GASAC	G3Q321_GASAC	ENSGACP00000007188	ENSGACP00000024270	Ras homolog family member Cb.	Heparin-binding EGF-like growth factor a.	0.474
G3NQ93_GASAC	G3P6B8_GASAC	ENSGACP00000007509	ENSGACP00000013141	Uncharacterized protein.	Uncharacterized protein.	0.619
G3NQ93_GASAC	G3PBZ4_GASAC	ENSGACP00000007509	ENSGACP00000015118	Uncharacterized protein.	Link domain-containing protein.	0.571
G3NQ93_GASAC	G3PVM2_GASAC	ENSGACP00000007509	ENSGACP00000021661	Uncharacterized protein.	Rho GTPase activating protein 24.	0.618
G3NQ93_GASAC	G3Q1Y5_GASAC	ENSGACP00000007509	ENSGACP00000023884	Uncharacterized protein.	Uncharacterized protein.	0.618