(50 nodes) Regulation of dendrite development network (Gasterosteus aculeatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	G3PEL8_GASAC	Polyglutamine binding protein 1. (244 aa)
	G3PJV0_GASAC	Homeobox protein cut-like. (1462 aa)
	CDKL5	Cyclin dependent kinase like 5. (938 aa)
	G3PLY8_GASAC	WD_REPEATS_REGION domain-containing protein. (201 aa)
	G3PLZ2_GASAC	F-box and WD repeat domain containing 8. (415 aa)
	G3PMZ0_GASAC	BAI1 associated protein 2. (534 aa)
	G3PQ09_GASAC	Anaphase promoting complex subunit 2; Belongs to the cullin family. (770 aa)
	G3PQM1_GASAC	Cyclin-dependent kinase-like 5. (1048 aa)
	G3N5G3_GASAC	FAT atypical cadherin 3a. (4552 aa)
	G3N788_GASAC	Si:ch211-188f17.1. (1572 aa)
	G3NA41_GASAC	HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2a. (1528 aa)
	G3NB07_GASAC	Drebrin-like a. (420 aa)
	G3QCJ1_GASAC	Rap guanine nucleotide exchange factor (GEF) 6. (727 aa)
	G3QC90_GASAC	Drebrin 1. (628 aa)
	G3QC61_GASAC	Uncharacterized protein. (314 aa)
	G3QBG4_GASAC	FAT atypical cadherin 3b. (4536 aa)
	G3Q7U8_GASAC	Uncharacterized protein. (702 aa)
	G3Q6B4_GASAC	Caprin family member 2. (915 aa)
	G3Q0Z3_GASAC	Uncharacterized protein. (186 aa)
	G3Q0F8_GASAC	V-crk avian sarcoma virus CT10 oncogene homolog-like. (306 aa)
	G3PWG4_GASAC	Rap guanine nucleotide exchange factor (GEF) 2. (1149 aa)
	G3PVV5_GASAC	NEDD4 like E3 ubiquitin protein ligase. (978 aa)
	G3PTH4_GASAC	E3 ubiquitin-protein ligase. (913 aa)
	G3PSL9_GASAC	Cell cycle associated protein 1a. (655 aa)
	G3PSA3_GASAC	CREB regulated transcription coactivator 1a. (628 aa)
	G3PR36_GASAC	Serine/threonine kinase 11; Belongs to the protein kinase superfamily. (440 aa)
	G3PR04_GASAC	Uncharacterized protein. (1532 aa)
	G3NB82_GASAC	Glycogen synthase kinase 3 alpha a; Belongs to the protein kinase superfamily. (437 aa)
	G3NED2_GASAC	Interleukin 1 receptor accessory protein-like 1a. (673 aa)
	G3NEK1_GASAC	Uncharacterized protein. (1137 aa)
	G3NEW3_GASAC	Eukaryotic elongation factor 2 kinase. (749 aa)
	G3NF96_GASAC	Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family. (205 aa)
	G3NG85_GASAC	Protein kinase C and casein kinase substrate in neurons 1a. (439 aa)
	G3NHE6_GASAC	Glycogen synthase kinase 3 beta, genome duplicate b; Belongs to the protein kinase superfamily. (420 aa)
	G3NMD8_GASAC	Protein kinase C and casein kinase substrate in neurons 1b. (445 aa)
	CRK	CRK proto-oncogene, adaptor protein. (309 aa)
	G3P154_GASAC	ANK_REP_REGION domain-containing protein. (161 aa)
	G3P162_GASAC	Ankyrin repeat domain 27 (VPS9 domain). (378 aa)
	CRTC1	CREB regulated transcription coactivator 1b. (631 aa)
	G3P4D2_GASAC	Glycogen synthase kinase 3 alpha b; Belongs to the protein kinase superfamily. (440 aa)
	G3P4Q9_GASAC	PKS_ER domain-containing protein. (426 aa)
	G3P610_GASAC	Cell cycle associated protein 1b. (693 aa)
	RELN	Reelin. (3478 aa)
	G3P6Q0_GASAC	Inhibitor of DNA binding 1, HLH protein. (132 aa)
	G3P7K3_GASAC	Si:dkey-40c11.2. (455 aa)
	G3P7M6_GASAC	DEAH (Asp-Glu-Ala-His) box polypeptide 36. (1014 aa)
	G3P8T9_GASAC	Leucine zipper, putative tumor suppressor 1. (607 aa)
	G3P9W9_GASAC	BAI1-associated protein 2a. (532 aa)
	G3PAZ5_GASAC	Drebrin-like b. (386 aa)
	G3PIY8_GASAC	Reticulon 4 interacting protein 1. (392 aa)

Your Current Organism:

Gasterosteus aculeatus

NCBI taxonomy Id: 69293
Other names: G. aculeatus, three spined stickleback, three-spined stickleback

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CRK	G3NB82_GASAC	ENSGACP00000007172	ENSGACP00000002578	CRK proto-oncogene, adaptor protein.	Glycogen synthase kinase 3 alpha a; Belongs to the protein kinase superfamily.	0.449
CRK	G3NHE6_GASAC	ENSGACP00000007172	ENSGACP00000004754	CRK proto-oncogene, adaptor protein.	Glycogen synthase kinase 3 beta, genome duplicate b; Belongs to the protein kinase superfamily.	0.449
CRK	G3P4D2_GASAC	ENSGACP00000007172	ENSGACP00000012455	CRK proto-oncogene, adaptor protein.	Glycogen synthase kinase 3 alpha b; Belongs to the protein kinase superfamily.	0.462
CRK	G3P9W9_GASAC	ENSGACP00000007172	ENSGACP00000014393	CRK proto-oncogene, adaptor protein.	BAI1-associated protein 2a.	0.573
CRK	G3PMZ0_GASAC	ENSGACP00000007172	ENSGACP00000018973	CRK proto-oncogene, adaptor protein.	BAI1 associated protein 2.	0.573
CRK	G3Q0F8_GASAC	ENSGACP00000007172	ENSGACP00000023350	CRK proto-oncogene, adaptor protein.	V-crk avian sarcoma virus CT10 oncogene homolog-like.	0.845
CRK	G3QC61_GASAC	ENSGACP00000007172	ENSGACP00000027477	CRK proto-oncogene, adaptor protein.	Uncharacterized protein.	0.842
CRTC1	G3NB82_GASAC	ENSGACP00000011336	ENSGACP00000002578	CREB regulated transcription coactivator 1b.	Glycogen synthase kinase 3 alpha a; Belongs to the protein kinase superfamily.	0.565
CRTC1	G3NHE6_GASAC	ENSGACP00000011336	ENSGACP00000004754	CREB regulated transcription coactivator 1b.	Glycogen synthase kinase 3 beta, genome duplicate b; Belongs to the protein kinase superfamily.	0.556
CRTC1	G3P4D2_GASAC	ENSGACP00000011336	ENSGACP00000012455	CREB regulated transcription coactivator 1b.	Glycogen synthase kinase 3 alpha b; Belongs to the protein kinase superfamily.	0.556
CRTC1	G3PR36_GASAC	ENSGACP00000011336	ENSGACP00000020071	CREB regulated transcription coactivator 1b.	Serine/threonine kinase 11; Belongs to the protein kinase superfamily.	0.445
G3N5G3_GASAC	G3QBG4_GASAC	ENSGACP00000000536	ENSGACP00000027230	FAT atypical cadherin 3a.	FAT atypical cadherin 3b.	0.795
G3N788_GASAC	G3P4Q9_GASAC	ENSGACP00000001165	ENSGACP00000012582	Si:ch211-188f17.1.	PKS_ER domain-containing protein.	0.447
G3N788_GASAC	G3PIY8_GASAC	ENSGACP00000001165	ENSGACP00000017567	Si:ch211-188f17.1.	Reticulon 4 interacting protein 1.	0.447
G3NA41_GASAC	G3P4Q9_GASAC	ENSGACP00000002183	ENSGACP00000012582	HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2a.	PKS_ER domain-containing protein.	0.447
G3NA41_GASAC	G3PIY8_GASAC	ENSGACP00000002183	ENSGACP00000017567	HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2a.	Reticulon 4 interacting protein 1.	0.447
G3NB82_GASAC	CRK	ENSGACP00000002578	ENSGACP00000007172	Glycogen synthase kinase 3 alpha a; Belongs to the protein kinase superfamily.	CRK proto-oncogene, adaptor protein.	0.449
G3NB82_GASAC	CRTC1	ENSGACP00000002578	ENSGACP00000011336	Glycogen synthase kinase 3 alpha a; Belongs to the protein kinase superfamily.	CREB regulated transcription coactivator 1b.	0.565
G3NB82_GASAC	G3PR36_GASAC	ENSGACP00000002578	ENSGACP00000020071	Glycogen synthase kinase 3 alpha a; Belongs to the protein kinase superfamily.	Serine/threonine kinase 11; Belongs to the protein kinase superfamily.	0.511
G3NB82_GASAC	G3PSA3_GASAC	ENSGACP00000002578	ENSGACP00000020489	Glycogen synthase kinase 3 alpha a; Belongs to the protein kinase superfamily.	CREB regulated transcription coactivator 1a.	0.556