31 items (Gasterosteus aculeatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	G3Q4D0_GASAC	Cilia and flagella associated protein 100. (449 aa)
	G3N6U1_GASAC	RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding. (456 aa)
	G3N8N2_GASAC	Zinc finger, MYND-type containing 10. (430 aa)
	G3NA61_GASAC	Armadillo repeat containing 4. (1039 aa)
	G3ND32_GASAC	Tektin 2 (testicular). (432 aa)
	G3Q9Z8_GASAC	RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding. (469 aa)
	G3Q5Z4_GASAC	Coiled-coil domain containing 151. (552 aa)
	SPAG1	Sperm associated antigen 1. (892 aa)
	G3NHI7_GASAC	Uncharacterized protein. (303 aa)
	G3NQN6_GASAC	EF-hand calcium binding domain 1. (218 aa)
	G3NTU2_GASAC	PIH1 domain containing 1. (295 aa)
	G3NWK7_GASAC	Uncharacterized protein. (609 aa)
	G3NWN6_GASAC	Dynein assembly factor 1, axonemal. (495 aa)
	G3NWX3_GASAC	WD_REPEATS_REGION domain-containing protein. (415 aa)
	G3NXE0_GASAC	Coiled-coil domain containing 114. (565 aa)
	G3NZ39_GASAC	Dynein, axonemal, assembly factor 3 like. (461 aa)
	G3P1J3_GASAC	Dynein, axonemal, intermediate chain 1, paralog 2. (708 aa)
	G3P1Z7_GASAC	Tetratricopeptide repeat domain 25. (480 aa)
	G3P3C9_GASAC	Tetratricopeptide repeat domain 12. (692 aa)
	G3P823_GASAC	Dynein, axonemal, intermediate chain 2b. (570 aa)
	G3P9D6_GASAC	PIH1 domain containing 2. (316 aa)
	G3PBQ1_GASAC	Uncharacterized protein. (286 aa)
	G3PEA3_GASAC	WD repeat domain 92. (698 aa)
	G3PHI0_GASAC	NYD-SP28 domain-containing protein. (451 aa)
	G3PIL2_GASAC	Dynein, axonemal, light chain 1. (194 aa)
	G3PM27_GASAC	Dynein axonemal assembly factor 4. (422 aa)
	G3PN32_GASAC	WD repeat domain 78. (782 aa)
	G3PTC3_GASAC	Leucine rich repeat containing 6. (187 aa)
	G3PU81_GASAC	Uncharacterized protein. (664 aa)
	G3Q0F9_GASAC	PIH1 domain containing 3. (194 aa)
	G3Q2J0_GASAC	Coiled-coil domain containing 40. (886 aa)

Your Current Organism:

Gasterosteus aculeatus

NCBI taxonomy Id: 69293
Other names: G. aculeatus, three spined stickleback, three-spined stickleback

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
G3N6U1_GASAC	G3NHI7_GASAC	ENSGACP00000001016	ENSGACP00000004796	RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding.	Uncharacterized protein.	0.791
G3N6U1_GASAC	G3NQN6_GASAC	ENSGACP00000001016	ENSGACP00000007652	RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding.	EF-hand calcium binding domain 1.	0.488
G3N6U1_GASAC	G3NTU2_GASAC	ENSGACP00000001016	ENSGACP00000008760	RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding.	PIH1 domain containing 1.	0.977
G3N6U1_GASAC	G3P1Z7_GASAC	ENSGACP00000001016	ENSGACP00000011620	RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding.	Tetratricopeptide repeat domain 25.	0.744
G3N6U1_GASAC	G3P3C9_GASAC	ENSGACP00000001016	ENSGACP00000012102	RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding.	Tetratricopeptide repeat domain 12.	0.750
G3N6U1_GASAC	G3P9D6_GASAC	ENSGACP00000001016	ENSGACP00000014210	RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding.	PIH1 domain containing 2.	0.948
G3N6U1_GASAC	G3PEA3_GASAC	ENSGACP00000001016	ENSGACP00000015927	RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding.	WD repeat domain 92.	0.794
G3N6U1_GASAC	G3PM27_GASAC	ENSGACP00000001016	ENSGACP00000018658	RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding.	Dynein axonemal assembly factor 4.	0.837
G3N6U1_GASAC	G3Q0F9_GASAC	ENSGACP00000001016	ENSGACP00000023351	RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding.	PIH1 domain containing 3.	0.504
G3N6U1_GASAC	G3Q9Z8_GASAC	ENSGACP00000001016	ENSGACP00000026714	RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding.	RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding.	0.999
G3N6U1_GASAC	SPAG1	ENSGACP00000001016	ENSGACP00000004648	RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding.	Sperm associated antigen 1.	0.791
G3N8N2_GASAC	G3NA61_GASAC	ENSGACP00000001668	ENSGACP00000002204	Zinc finger, MYND-type containing 10.	Armadillo repeat containing 4.	0.547
G3N8N2_GASAC	G3ND32_GASAC	ENSGACP00000001668	ENSGACP00000003232	Zinc finger, MYND-type containing 10.	Tektin 2 (testicular).	0.402
G3N8N2_GASAC	G3NHI7_GASAC	ENSGACP00000001668	ENSGACP00000004796	Zinc finger, MYND-type containing 10.	Uncharacterized protein.	0.531
G3N8N2_GASAC	G3NWK7_GASAC	ENSGACP00000001668	ENSGACP00000009726	Zinc finger, MYND-type containing 10.	Uncharacterized protein.	0.455
G3N8N2_GASAC	G3NWN6_GASAC	ENSGACP00000001668	ENSGACP00000009755	Zinc finger, MYND-type containing 10.	Dynein assembly factor 1, axonemal.	0.694
G3N8N2_GASAC	G3NZ39_GASAC	ENSGACP00000001668	ENSGACP00000010611	Zinc finger, MYND-type containing 10.	Dynein, axonemal, assembly factor 3 like.	0.584
G3N8N2_GASAC	G3P1J3_GASAC	ENSGACP00000001668	ENSGACP00000011466	Zinc finger, MYND-type containing 10.	Dynein, axonemal, intermediate chain 1, paralog 2.	0.695
G3N8N2_GASAC	G3P823_GASAC	ENSGACP00000001668	ENSGACP00000013747	Zinc finger, MYND-type containing 10.	Dynein, axonemal, intermediate chain 2b.	0.672
G3N8N2_GASAC	G3PBQ1_GASAC	ENSGACP00000001668	ENSGACP00000015025	Zinc finger, MYND-type containing 10.	Uncharacterized protein.	0.592