(7 nodes) Primary miRNA binding network (Gasterosteus aculeatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	G3Q886_GASAC	Pseudouridine synthase 10. (522 aa)
	SRSF3	Serine and arginine rich splicing factor 3b. (165 aa)
	SRF	Serum response factor. (507 aa)
	G3NPU8_GASAC	Uncharacterized protein. (427 aa)
	G3NPV2_GASAC	Uncharacterized protein. (258 aa)
	G3PHS5_GASAC	DGCR8 microprocessor complex subunit. (751 aa)
	G3Q958_GASAC	MADS-box domain-containing protein. (473 aa)

Your Current Organism:

Gasterosteus aculeatus

NCBI taxonomy Id: 69293
Other names: G. aculeatus, three spined stickleback, three-spined stickleback

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
G3NPU8_GASAC	G3NPV2_GASAC	ENSGACP00000007363	ENSGACP00000007367	Uncharacterized protein.	Uncharacterized protein.	0.900
G3NPU8_GASAC	G3PHS5_GASAC	ENSGACP00000007363	ENSGACP00000017151	Uncharacterized protein.	DGCR8 microprocessor complex subunit.	0.982
G3NPV2_GASAC	G3NPU8_GASAC	ENSGACP00000007367	ENSGACP00000007363	Uncharacterized protein.	Uncharacterized protein.	0.900
G3NPV2_GASAC	G3PHS5_GASAC	ENSGACP00000007367	ENSGACP00000017151	Uncharacterized protein.	DGCR8 microprocessor complex subunit.	0.982
G3PHS5_GASAC	G3NPU8_GASAC	ENSGACP00000017151	ENSGACP00000007363	DGCR8 microprocessor complex subunit.	Uncharacterized protein.	0.982
G3PHS5_GASAC	G3NPV2_GASAC	ENSGACP00000017151	ENSGACP00000007367	DGCR8 microprocessor complex subunit.	Uncharacterized protein.	0.982
G3Q958_GASAC	SRF	ENSGACP00000026422	ENSGACP00000004953	MADS-box domain-containing protein.	Serum response factor.	0.847
SRF	G3Q958_GASAC	ENSGACP00000004953	ENSGACP00000026422	Serum response factor.	MADS-box domain-containing protein.	0.847