51 items (Gasterosteus aculeatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	G3PF52_GASAC	PRP18 pre-mRNA processing factor 18 homolog (yeast). (341 aa)
	G3PK84_GASAC	CD2 (cytoplasmic tail) binding protein 2. (347 aa)
	G3PLX6_GASAC	Small nuclear ribonucleoprotein polypeptide A. (294 aa)
	G3PR91_GASAC	Splicing factor 3a, subunit 2. (292 aa)
	G3PS33_GASAC	PRP4 pre-mRNA processing factor 4 homolog (yeast). (503 aa)
	G3PU38_GASAC	Zgc:158803. (375 aa)
	SART1	Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP. (770 aa)
	G3PYQ5_GASAC	LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated. (80 aa)
	G3PZX4_GASAC	Small nuclear ribonucleoprotein Sm D3. (128 aa)
	G3Q062_GASAC	Si:ch211-114c17.1. (630 aa)
	G3Q5I4_GASAC	Splicing factor 3b, subunit 2. (655 aa)
	G3Q7Z9_GASAC	Small nuclear ribonucleoprotein polypeptide B2. (224 aa)
	G3Q9D2_GASAC	Small nuclear ribonucleoprotein polypeptide F. (85 aa)
	G3QAY7_GASAC	HIV-1 Tat specific factor 1. (442 aa)
	G3QCL0_GASAC	Zinc finger, matrin-type 2. (201 aa)
	G3PIM5_GASAC	Small nuclear ribonucleoprotein polypeptide G. (43 aa)
	G3PH10_GASAC	PRP39 pre-mRNA processing factor 39 homolog (yeast). (744 aa)
	G3PGD1_GASAC	LUC7-like 3 pre-mRNA splicing factor. (433 aa)
	G3PDS4_GASAC	Splicing factor 3a, subunit 1. (785 aa)
	G3PDC6_GASAC	PRP3 pre-mRNA processing factor 3 homolog (yeast). (702 aa)
	G3PC73_GASAC	Small nuclear ribonucleoprotein 200 (U5). (2147 aa)
	G3PC51_GASAC	PRP31 pre-mRNA processing factor 31 homolog (yeast). (534 aa)
	G3PA33_GASAC	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (92 aa)
	G3P804_GASAC	LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated. (103 aa)
	G3P7W6_GASAC	Splicing factor 3B subunit 5; Belongs to the SF3B5 family. (86 aa)
	G3P5Y9_GASAC	Zgc:153119. (172 aa)
	G3P5Y3_GASAC	Small nuclear ribonucleoprotein polypeptide A. (277 aa)
	G3P4V7_GASAC	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (128 aa)
	G3P3L5_GASAC	Elongation factor Tu GTP binding domain containing 2. (971 aa)
	G3P253_GASAC	Splicing factor 3b, subunit 1. (1312 aa)
	G3P1C7_GASAC	LUC7-like (S. cerevisiae). (367 aa)
	G3P105_GASAC	Pre-mRNA processing factor 8. (2344 aa)
	G3P0T9_GASAC	Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (142 aa)
	G3P0K4_GASAC	Ubiquitin specific peptidase 39. (506 aa)
	LSM4	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (150 aa)
	G3NYT4_GASAC	Splicing factor 3a, subunit 3. (501 aa)
	G3NU46_GASAC	Small nuclear ribonucleoprotein Sm D2. (118 aa)
	G3NR45_GASAC	PRP40 pre-mRNA processing factor 40 homolog A. (844 aa)
	G3NQ98_GASAC	Small nuclear ribonucleoprotein 40 (U5). (377 aa)
	LSM5	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (91 aa)
	SNRPD1	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (119 aa)
	SNRPC	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. SNRPC/U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. Belongs to the U1 [...] (149 aa)
	G3NLZ7_GASAC	Splicing factor 3b, subunit 6. (125 aa)
	G3NLV0_GASAC	PHD finger protein 5A. (111 aa)
	G3NI70_GASAC	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (95 aa)
	LSM3	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (102 aa)
	G3NG36_GASAC	Small nuclear ribonucleoprotein-associated protein. (238 aa)
	G3NF69_GASAC	DEAD (Asp-Glu-Ala-Asp) box polypeptide 23; Belongs to the DEAD box helicase family. (791 aa)
	G3NDR5_GASAC	Splicing factor 3b, subunit 3. (1218 aa)
	G3NDK9_GASAC	PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae). (939 aa)
	G3NAR2_GASAC	RNA binding motif protein X-linked 2. (218 aa)

Your Current Organism:

Gasterosteus aculeatus

NCBI taxonomy Id: 69293
Other names: G. aculeatus, three spined stickleback, three-spined stickleback

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
G3NAR2_GASAC	G3NDK9_GASAC	ENSGACP00000002407	ENSGACP00000003409	RNA binding motif protein X-linked 2.	PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae).	0.747
G3NAR2_GASAC	G3NDR5_GASAC	ENSGACP00000002407	ENSGACP00000003465	RNA binding motif protein X-linked 2.	Splicing factor 3b, subunit 3.	0.993
G3NAR2_GASAC	G3NG36_GASAC	ENSGACP00000002407	ENSGACP00000004291	RNA binding motif protein X-linked 2.	Small nuclear ribonucleoprotein-associated protein.	0.844
G3NAR2_GASAC	G3NI70_GASAC	ENSGACP00000002407	ENSGACP00000005030	RNA binding motif protein X-linked 2.	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.878
G3NAR2_GASAC	G3NLV0_GASAC	ENSGACP00000002407	ENSGACP00000006313	RNA binding motif protein X-linked 2.	PHD finger protein 5A.	0.995
G3NAR2_GASAC	G3NLZ7_GASAC	ENSGACP00000002407	ENSGACP00000006360	RNA binding motif protein X-linked 2.	Splicing factor 3b, subunit 6.	0.726
G3NAR2_GASAC	G3NQ98_GASAC	ENSGACP00000002407	ENSGACP00000007514	RNA binding motif protein X-linked 2.	Small nuclear ribonucleoprotein 40 (U5).	0.710
G3NAR2_GASAC	G3NR45_GASAC	ENSGACP00000002407	ENSGACP00000007811	RNA binding motif protein X-linked 2.	PRP40 pre-mRNA processing factor 40 homolog A.	0.676
G3NAR2_GASAC	G3NU46_GASAC	ENSGACP00000002407	ENSGACP00000008864	RNA binding motif protein X-linked 2.	Small nuclear ribonucleoprotein Sm D2.	0.924
G3NAR2_GASAC	G3NYT4_GASAC	ENSGACP00000002407	ENSGACP00000010505	RNA binding motif protein X-linked 2.	Splicing factor 3a, subunit 3.	0.949
G3NAR2_GASAC	G3P0T9_GASAC	ENSGACP00000002407	ENSGACP00000011212	RNA binding motif protein X-linked 2.	Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family.	0.710
G3NAR2_GASAC	G3P105_GASAC	ENSGACP00000002407	ENSGACP00000011278	RNA binding motif protein X-linked 2.	Pre-mRNA processing factor 8.	0.947
G3NAR2_GASAC	G3P253_GASAC	ENSGACP00000002407	ENSGACP00000011676	RNA binding motif protein X-linked 2.	Splicing factor 3b, subunit 1.	0.994
G3NAR2_GASAC	G3P3L5_GASAC	ENSGACP00000002407	ENSGACP00000012188	RNA binding motif protein X-linked 2.	Elongation factor Tu GTP binding domain containing 2.	0.935
G3NAR2_GASAC	G3P4V7_GASAC	ENSGACP00000002407	ENSGACP00000012630	RNA binding motif protein X-linked 2.	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	0.826
G3NAR2_GASAC	G3P5Y3_GASAC	ENSGACP00000002407	ENSGACP00000013006	RNA binding motif protein X-linked 2.	Small nuclear ribonucleoprotein polypeptide A.	0.892
G3NAR2_GASAC	G3P5Y9_GASAC	ENSGACP00000002407	ENSGACP00000013012	RNA binding motif protein X-linked 2.	Zgc:153119.	0.797
G3NAR2_GASAC	G3P7W6_GASAC	ENSGACP00000002407	ENSGACP00000013690	RNA binding motif protein X-linked 2.	Splicing factor 3B subunit 5; Belongs to the SF3B5 family.	0.960
G3NAR2_GASAC	G3P804_GASAC	ENSGACP00000002407	ENSGACP00000013728	RNA binding motif protein X-linked 2.	LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.892
G3NAR2_GASAC	G3PA33_GASAC	ENSGACP00000002407	ENSGACP00000014457	RNA binding motif protein X-linked 2.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.922