23 items (Gasterosteus aculeatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	G3Q4A0_GASAC	Fibrinogen beta chain. (499 aa)
	G3Q3B7_GASAC	NK2 homeobox 5. (315 aa)
	G3Q170_GASAC	Wolfram syndrome 1b (wolframin). (868 aa)
	G3PX44_GASAC	Tyrosine-protein kinase. (1141 aa)
	G3PU90_GASAC	Wolfram syndrome 1a (wolframin). (802 aa)
	G3PSD9_GASAC	Angiopoietin-like 4. (479 aa)
	G3P2I2_GASAC	Uncharacterized protein. (296 aa)
	G3PRG3_GASAC	Uncharacterized protein. (664 aa)
	G3PLP3_GASAC	Secretogranin II (chromogranin C), b. (601 aa)
	G3PDV1_GASAC	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins. (672 aa)
	G3PAC1_GASAC	Tyrosine-protein kinase. (1092 aa)
	G3P8P2_GASAC	Tumor necrosis factor, alpha-induced protein 3. (785 aa)
	G3P503_GASAC	GATA binding protein 2a. (456 aa)
	G3P4B8_GASAC	TATA element modulatory factor 1. (642 aa)
	G3N6K3_GASAC	Serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1; Belongs to the serpin family. (395 aa)
	GATA2	GATA binding protein 2. (455 aa)
	G3NFF0_GASAC	Pancreatic and duodenal homeobox 1. (252 aa)
	G3NKM2_GASAC	Nuclear factor, erythroid 2-like 2a. (601 aa)
	G3NQD6_GASAC	Neuron-derived neurotrophic factor. (571 aa)
	G3NZD1_GASAC	Fibroblast growth factor; Belongs to the heparin-binding growth factors family. (192 aa)
	G3NZV2_GASAC	Fibrinogen C-terminal domain-containing protein. (440 aa)
	G3N4U8_GASAC	Uncharacterized protein. (513 aa)
	G3P0W7_GASAC	Receptor (G protein-coupled) activity modifying protein 2. (202 aa)

Your Current Organism:

Gasterosteus aculeatus

NCBI taxonomy Id: 69293
Other names: G. aculeatus, three spined stickleback, three-spined stickleback

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
G3N6K3_GASAC	G3Q4A0_GASAC	ENSGACP00000000928	ENSGACP00000024704	Serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1; Belongs to the serpin family.	Fibrinogen beta chain.	0.653
G3NKM2_GASAC	G3PAC1_GASAC	ENSGACP00000005885	ENSGACP00000014545	Nuclear factor, erythroid 2-like 2a.	Tyrosine-protein kinase.	0.453
G3NKM2_GASAC	G3PX44_GASAC	ENSGACP00000005885	ENSGACP00000022183	Nuclear factor, erythroid 2-like 2a.	Tyrosine-protein kinase.	0.453
G3NZV2_GASAC	G3PSD9_GASAC	ENSGACP00000010875	ENSGACP00000020525	Fibrinogen C-terminal domain-containing protein.	Angiopoietin-like 4.	0.847
G3P503_GASAC	G3Q3B7_GASAC	ENSGACP00000012676	ENSGACP00000024369	GATA binding protein 2a.	NK2 homeobox 5.	0.455
G3P8P2_GASAC	G3PAC1_GASAC	ENSGACP00000013966	ENSGACP00000014545	Tumor necrosis factor, alpha-induced protein 3.	Tyrosine-protein kinase.	0.510
G3P8P2_GASAC	G3PX44_GASAC	ENSGACP00000013966	ENSGACP00000022183	Tumor necrosis factor, alpha-induced protein 3.	Tyrosine-protein kinase.	0.510
G3PAC1_GASAC	G3NKM2_GASAC	ENSGACP00000014545	ENSGACP00000005885	Tyrosine-protein kinase.	Nuclear factor, erythroid 2-like 2a.	0.453
G3PAC1_GASAC	G3P8P2_GASAC	ENSGACP00000014545	ENSGACP00000013966	Tyrosine-protein kinase.	Tumor necrosis factor, alpha-induced protein 3.	0.510
G3PAC1_GASAC	G3PDV1_GASAC	ENSGACP00000014545	ENSGACP00000015775	Tyrosine-protein kinase.	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.	0.407
G3PAC1_GASAC	G3PX44_GASAC	ENSGACP00000014545	ENSGACP00000022183	Tyrosine-protein kinase.	Tyrosine-protein kinase.	0.850
G3PAC1_GASAC	GATA2	ENSGACP00000014545	ENSGACP00000001031	Tyrosine-protein kinase.	GATA binding protein 2.	0.401
G3PDV1_GASAC	G3PAC1_GASAC	ENSGACP00000015775	ENSGACP00000014545	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.	Tyrosine-protein kinase.	0.407
G3PDV1_GASAC	G3PX44_GASAC	ENSGACP00000015775	ENSGACP00000022183	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.	Tyrosine-protein kinase.	0.407
G3PSD9_GASAC	G3NZV2_GASAC	ENSGACP00000020525	ENSGACP00000010875	Angiopoietin-like 4.	Fibrinogen C-terminal domain-containing protein.	0.847
G3PX44_GASAC	G3NKM2_GASAC	ENSGACP00000022183	ENSGACP00000005885	Tyrosine-protein kinase.	Nuclear factor, erythroid 2-like 2a.	0.453
G3PX44_GASAC	G3P8P2_GASAC	ENSGACP00000022183	ENSGACP00000013966	Tyrosine-protein kinase.	Tumor necrosis factor, alpha-induced protein 3.	0.510
G3PX44_GASAC	G3PAC1_GASAC	ENSGACP00000022183	ENSGACP00000014545	Tyrosine-protein kinase.	Tyrosine-protein kinase.	0.850
G3PX44_GASAC	G3PDV1_GASAC	ENSGACP00000022183	ENSGACP00000015775	Tyrosine-protein kinase.	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.	0.407
G3Q3B7_GASAC	G3P503_GASAC	ENSGACP00000024369	ENSGACP00000012676	NK2 homeobox 5.	GATA binding protein 2a.	0.455