46 items (Gasterosteus aculeatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SNRPD1	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (119 aa)
	SNRPC	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. SNRPC/U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. Belongs to the U1 [...] (149 aa)
	G3NG48_GASAC	UHRF1 binding protein 1. (1330 aa)
	G3NDR5_GASAC	Splicing factor 3b, subunit 3. (1218 aa)
	G3NBJ7_GASAC	CWC22 spliceosome associated protein homolog. (824 aa)
	G3NAR2_GASAC	RNA binding motif protein X-linked 2. (218 aa)
	G3NAG5_GASAC	DEAH (Asp-Glu-Ala-His) box polypeptide 16. (1051 aa)
	G3N9G4_GASAC	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (166 aa)
	G3N4L7_GASAC	PRP38_assoc domain-containing protein. (170 aa)
	G3PZX4_GASAC	Small nuclear ribonucleoprotein Sm D3. (128 aa)
	G3PZI1_GASAC	Microfibril associated protein 1. (439 aa)
	SMU1	SMU1 DNA replication regulator and spliceosomal factor. (513 aa)
	G3PUW7_GASAC	GC-rich sequence DNA-binding factor 2. (588 aa)
	G3PT02_GASAC	CWC27 spliceosome associated cyclophilin. (429 aa)
	G3PR91_GASAC	Splicing factor 3a, subunit 2. (292 aa)
	G3PPZ4_GASAC	Uncharacterized protein. (183 aa)
	G3PPZ3_GASAC	Cwf21 domain-containing protein. (624 aa)
	G3PNF0_GASAC	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (471 aa)
	G3PKK4_GASAC	Uncharacterized protein. (393 aa)
	G3PKJ6_GASAC	Smad nuclear interacting protein. (356 aa)
	G3PH10_GASAC	PRP39 pre-mRNA processing factor 39 homolog (yeast). (744 aa)
	EFL1	Elongation factor like GTPase 1. (1100 aa)
	G3PF52_GASAC	PRP18 pre-mRNA processing factor 18 homolog (yeast). (341 aa)
	G3PDK1_GASAC	Crooked neck pre-mRNA splicing factor 1. (750 aa)
	G3PC73_GASAC	Small nuclear ribonucleoprotein 200 (U5). (2147 aa)
	G3QBI1_GASAC	PAX3 and PAX7 binding protein 1. (909 aa)
	G3QCL0_GASAC	Zinc finger, matrin-type 2. (201 aa)
	G3QCN2_GASAC	IK cytokine. (556 aa)
	G3QAL6_GASAC	CWC15 spliceosome associated protein homolog. (236 aa)
	G3Q963_GASAC	Eukaryotic translation initiation factor 4A3; Belongs to the DEAD box helicase family. (413 aa)
	G3Q287_GASAC	CWC25 spliceosome associated protein homolog. (423 aa)
	G3Q1S0_GASAC	RNA binding motif protein 22. (427 aa)
	G3Q062_GASAC	Si:ch211-114c17.1. (630 aa)
	G3P8Z0_GASAC	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (459 aa)
	G3P8D4_GASAC	Aquarius intron-binding spliceosomal factor. (1473 aa)
	G3P6H9_GASAC	XPA binding protein 2. (849 aa)
	G3P5S1_GASAC	Src homology 2 domain containing transforming protein D, a. (363 aa)
	G3P5Q5_GASAC	YJU2 splicing factor homolog. (340 aa)
	G3P5L1_GASAC	Ring finger protein 113A. (328 aa)
	LOC100174884	Tuftelin-interacting protein 11; Involved in pre-mRNA splicing, specifically in spliceosome disassembly during late-stage splicing events. Belongs to the TFP11/STIP family. (834 aa)
	G3P3L5_GASAC	Elongation factor Tu GTP binding domain containing 2. (971 aa)
	G3P1Y2_GASAC	Spliceosome associated factor 3, U4/U6 recycling protein. (901 aa)
	G3NVX4_GASAC	Peptidyl-prolyl cis-trans isomerase E; Catalyzes the cis-trans isomerization of proline imidic peptide bonds in proteins; Belongs to the cyclophilin-type PPIase family. PPIase E subfamily. (302 aa)
	G3NQ98_GASAC	Small nuclear ribonucleoprotein 40 (U5). (377 aa)
	G3NPB2_GASAC	Pre-mRNA processing factor 38A. (310 aa)
	G3NP39_GASAC	SNW domain containing 1. (534 aa)

Your Current Organism:

Gasterosteus aculeatus

NCBI taxonomy Id: 69293
Other names: G. aculeatus, three spined stickleback, three-spined stickleback

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EFL1	G3N4L7_GASAC	ENSGACP00000016548	ENSGACP00000000237	Elongation factor like GTPase 1.	PRP38_assoc domain-containing protein.	0.473
EFL1	G3N9G4_GASAC	ENSGACP00000016548	ENSGACP00000001954	Elongation factor like GTPase 1.	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.	0.554
EFL1	G3NAG5_GASAC	ENSGACP00000016548	ENSGACP00000002310	Elongation factor like GTPase 1.	DEAH (Asp-Glu-Ala-His) box polypeptide 16.	0.551
EFL1	G3NAR2_GASAC	ENSGACP00000016548	ENSGACP00000002407	Elongation factor like GTPase 1.	RNA binding motif protein X-linked 2.	0.705
EFL1	G3NBJ7_GASAC	ENSGACP00000016548	ENSGACP00000002694	Elongation factor like GTPase 1.	CWC22 spliceosome associated protein homolog.	0.854
EFL1	G3NDR5_GASAC	ENSGACP00000016548	ENSGACP00000003465	Elongation factor like GTPase 1.	Splicing factor 3b, subunit 3.	0.874
EFL1	G3NP39_GASAC	ENSGACP00000016548	ENSGACP00000007103	Elongation factor like GTPase 1.	SNW domain containing 1.	0.858
EFL1	G3NPB2_GASAC	ENSGACP00000016548	ENSGACP00000007176	Elongation factor like GTPase 1.	Pre-mRNA processing factor 38A.	0.473
EFL1	G3NQ98_GASAC	ENSGACP00000016548	ENSGACP00000007514	Elongation factor like GTPase 1.	Small nuclear ribonucleoprotein 40 (U5).	0.946
EFL1	G3NVX4_GASAC	ENSGACP00000016548	ENSGACP00000009493	Elongation factor like GTPase 1.	Peptidyl-prolyl cis-trans isomerase E; Catalyzes the cis-trans isomerization of proline imidic peptide bonds in proteins; Belongs to the cyclophilin-type PPIase family. PPIase E subfamily.	0.556
EFL1	G3P1Y2_GASAC	ENSGACP00000016548	ENSGACP00000011605	Elongation factor like GTPase 1.	Spliceosome associated factor 3, U4/U6 recycling protein.	0.501
EFL1	G3P5L1_GASAC	ENSGACP00000016548	ENSGACP00000012884	Elongation factor like GTPase 1.	Ring finger protein 113A.	0.696
EFL1	G3P5Q5_GASAC	ENSGACP00000016548	ENSGACP00000012928	Elongation factor like GTPase 1.	YJU2 splicing factor homolog.	0.687
EFL1	G3P5S1_GASAC	ENSGACP00000016548	ENSGACP00000012944	Elongation factor like GTPase 1.	Src homology 2 domain containing transforming protein D, a.	0.687
EFL1	G3P6H9_GASAC	ENSGACP00000016548	ENSGACP00000013202	Elongation factor like GTPase 1.	XPA binding protein 2.	0.867
EFL1	G3P8D4_GASAC	ENSGACP00000016548	ENSGACP00000013858	Elongation factor like GTPase 1.	Aquarius intron-binding spliceosomal factor.	0.856
EFL1	G3PC73_GASAC	ENSGACP00000016548	ENSGACP00000015197	Elongation factor like GTPase 1.	Small nuclear ribonucleoprotein 200 (U5).	0.878
EFL1	G3PDK1_GASAC	ENSGACP00000016548	ENSGACP00000015675	Elongation factor like GTPase 1.	Crooked neck pre-mRNA splicing factor 1.	0.879
EFL1	G3PF52_GASAC	ENSGACP00000016548	ENSGACP00000016226	Elongation factor like GTPase 1.	PRP18 pre-mRNA processing factor 18 homolog (yeast).	0.578
EFL1	G3PKJ6_GASAC	ENSGACP00000016548	ENSGACP00000018126	Elongation factor like GTPase 1.	Smad nuclear interacting protein.	0.711