(13 nodes) aminoacyl-tRNA synthetase multienzyme complex network (Gasterosteus aculeatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	G3QCA0_GASAC	Arginyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family. (662 aa)
	G3N587_GASAC	tRNA-binding domain-containing protein. (149 aa)
	G3N980_GASAC	GST C-terminal domain-containing protein; Belongs to the class-I aminoacyl-tRNA synthetase family. (287 aa)
	G3NCH4_GASAC	Eukaryotic translation elongation factor 1 epsilon 1. (178 aa)
	G3NEN5_GASAC	Glutaminyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family. (781 aa)
	G3NT96_GASAC	Methionyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family. (919 aa)
	G3NVR3_GASAC	Isoleucyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family. (1272 aa)
	G3NWB9_GASAC	Aspartyl-tRNA synthetase. (535 aa)
	G3PEV4_GASAC	Aminoacyl tRNA synthetase complex interacting multifunctional protein 2. (317 aa)
	G3PPP0_GASAC	Glutamyl-prolyl-tRNA synthetase. (1604 aa)
	G3PT52_GASAC	Lysine--tRNA ligase. (612 aa)
	G3PZT1_GASAC	Aminoacyl tRNA synthetase complex interacting multifunctional protein 1a. (318 aa)
	G3QBX9_GASAC	Leucyl-tRNA synthetase b; Belongs to the class-I aminoacyl-tRNA synthetase family. (1170 aa)

Your Current Organism:

Gasterosteus aculeatus

NCBI taxonomy Id: 69293
Other names: G. aculeatus, three spined stickleback, three-spined stickleback

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
G3N587_GASAC	G3N980_GASAC	ENSGACP00000000457	ENSGACP00000001870	tRNA-binding domain-containing protein.	GST C-terminal domain-containing protein; Belongs to the class-I aminoacyl-tRNA synthetase family.	0.999
G3N587_GASAC	G3NCH4_GASAC	ENSGACP00000000457	ENSGACP00000003024	tRNA-binding domain-containing protein.	Eukaryotic translation elongation factor 1 epsilon 1.	0.938
G3N587_GASAC	G3NEN5_GASAC	ENSGACP00000000457	ENSGACP00000003786	tRNA-binding domain-containing protein.	Glutaminyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.	0.979
G3N587_GASAC	G3NT96_GASAC	ENSGACP00000000457	ENSGACP00000008564	tRNA-binding domain-containing protein.	Methionyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.	0.999
G3N587_GASAC	G3NVR3_GASAC	ENSGACP00000000457	ENSGACP00000009432	tRNA-binding domain-containing protein.	Isoleucyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.	0.961
G3N587_GASAC	G3NWB9_GASAC	ENSGACP00000000457	ENSGACP00000009638	tRNA-binding domain-containing protein.	Aspartyl-tRNA synthetase.	0.940
G3N587_GASAC	G3PEV4_GASAC	ENSGACP00000000457	ENSGACP00000016128	tRNA-binding domain-containing protein.	Aminoacyl tRNA synthetase complex interacting multifunctional protein 2.	0.964
G3N587_GASAC	G3PPP0_GASAC	ENSGACP00000000457	ENSGACP00000019575	tRNA-binding domain-containing protein.	Glutamyl-prolyl-tRNA synthetase.	0.999
G3N587_GASAC	G3PT52_GASAC	ENSGACP00000000457	ENSGACP00000020788	tRNA-binding domain-containing protein.	Lysine--tRNA ligase.	0.933
G3N587_GASAC	G3QBX9_GASAC	ENSGACP00000000457	ENSGACP00000027395	tRNA-binding domain-containing protein.	Leucyl-tRNA synthetase b; Belongs to the class-I aminoacyl-tRNA synthetase family.	0.964
G3N587_GASAC	G3QCA0_GASAC	ENSGACP00000000457	ENSGACP00000027516	tRNA-binding domain-containing protein.	Arginyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.	0.979
G3N980_GASAC	G3N587_GASAC	ENSGACP00000001870	ENSGACP00000000457	GST C-terminal domain-containing protein; Belongs to the class-I aminoacyl-tRNA synthetase family.	tRNA-binding domain-containing protein.	0.999
G3N980_GASAC	G3NCH4_GASAC	ENSGACP00000001870	ENSGACP00000003024	GST C-terminal domain-containing protein; Belongs to the class-I aminoacyl-tRNA synthetase family.	Eukaryotic translation elongation factor 1 epsilon 1.	0.989
G3N980_GASAC	G3NEN5_GASAC	ENSGACP00000001870	ENSGACP00000003786	GST C-terminal domain-containing protein; Belongs to the class-I aminoacyl-tRNA synthetase family.	Glutaminyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.	0.999
G3N980_GASAC	G3NT96_GASAC	ENSGACP00000001870	ENSGACP00000008564	GST C-terminal domain-containing protein; Belongs to the class-I aminoacyl-tRNA synthetase family.	Methionyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.	0.999
G3N980_GASAC	G3NVR3_GASAC	ENSGACP00000001870	ENSGACP00000009432	GST C-terminal domain-containing protein; Belongs to the class-I aminoacyl-tRNA synthetase family.	Isoleucyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.	0.999
G3N980_GASAC	G3NWB9_GASAC	ENSGACP00000001870	ENSGACP00000009638	GST C-terminal domain-containing protein; Belongs to the class-I aminoacyl-tRNA synthetase family.	Aspartyl-tRNA synthetase.	0.999
G3N980_GASAC	G3PEV4_GASAC	ENSGACP00000001870	ENSGACP00000016128	GST C-terminal domain-containing protein; Belongs to the class-I aminoacyl-tRNA synthetase family.	Aminoacyl tRNA synthetase complex interacting multifunctional protein 2.	0.999
G3N980_GASAC	G3PPP0_GASAC	ENSGACP00000001870	ENSGACP00000019575	GST C-terminal domain-containing protein; Belongs to the class-I aminoacyl-tRNA synthetase family.	Glutamyl-prolyl-tRNA synthetase.	0.999
G3N980_GASAC	G3PT52_GASAC	ENSGACP00000001870	ENSGACP00000020788	GST C-terminal domain-containing protein; Belongs to the class-I aminoacyl-tRNA synthetase family.	Lysine--tRNA ligase.	0.999