36 items (Gasterosteus aculeatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	G3Q5I4_GASAC	Splicing factor 3b, subunit 2. (655 aa)
	G3QAY7_GASAC	HIV-1 Tat specific factor 1. (442 aa)
	G3NDK9_GASAC	PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae). (939 aa)
	G3NF69_GASAC	DEAD (Asp-Glu-Ala-Asp) box polypeptide 23; Belongs to the DEAD box helicase family. (791 aa)
	G3NG36_GASAC	Small nuclear ribonucleoprotein-associated protein. (238 aa)
	LSM3	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (102 aa)
	G3NI52_GASAC	Inositol polyphosphate-5-phosphatase D. (868 aa)
	G3NI55_GASAC	Uncharacterized protein. (71 aa)
	G3NI70_GASAC	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (95 aa)
	SNRPD1	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (119 aa)
	G3NT48_GASAC	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (156 aa)
	G3NU46_GASAC	Small nuclear ribonucleoprotein Sm D2. (118 aa)
	G3P105_GASAC	Pre-mRNA processing factor 8. (2344 aa)
	G3P253_GASAC	Splicing factor 3b, subunit 1. (1312 aa)
	G3P5Y3_GASAC	Small nuclear ribonucleoprotein polypeptide A. (277 aa)
	G3P5Y9_GASAC	Zgc:153119. (172 aa)
	G3P7W6_GASAC	Splicing factor 3B subunit 5; Belongs to the SF3B5 family. (86 aa)
	G3P804_GASAC	LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated. (103 aa)
	G3PA33_GASAC	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (92 aa)
	G3PC73_GASAC	Small nuclear ribonucleoprotein 200 (U5). (2147 aa)
	G3PDC6_GASAC	PRP3 pre-mRNA processing factor 3 homolog (yeast). (702 aa)
	G3PF52_GASAC	PRP18 pre-mRNA processing factor 18 homolog (yeast). (341 aa)
	G3PIM5_GASAC	Small nuclear ribonucleoprotein polypeptide G. (43 aa)
	G3PJI3_GASAC	tRNA methyltransferase 13 homolog. (456 aa)
	G3PS33_GASAC	PRP4 pre-mRNA processing factor 4 homolog (yeast). (503 aa)
	G3PYQ5_GASAC	LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated. (80 aa)
	G3PZX4_GASAC	Small nuclear ribonucleoprotein Sm D3. (128 aa)
	G3Q7Z9_GASAC	Small nuclear ribonucleoprotein polypeptide B2. (224 aa)
	G3PK84_GASAC	CD2 (cytoplasmic tail) binding protein 2. (347 aa)
	G3P0T9_GASAC	Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (142 aa)
	G3PLX6_GASAC	Small nuclear ribonucleoprotein polypeptide A. (294 aa)
	SART1	Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP. (770 aa)
	G3P0K4_GASAC	Ubiquitin specific peptidase 39. (506 aa)
	LSM4	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (150 aa)
	G3NAR2_GASAC	RNA binding motif protein X-linked 2. (218 aa)
	G3NBG7_GASAC	RNA-binding region (RNP1, RRM) containing 3. (517 aa)

Your Current Organism:

Gasterosteus aculeatus

NCBI taxonomy Id: 69293
Other names: G. aculeatus, three spined stickleback, three-spined stickleback

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
G3NAR2_GASAC	G3NBG7_GASAC	ENSGACP00000002407	ENSGACP00000002664	RNA binding motif protein X-linked 2.	RNA-binding region (RNP1, RRM) containing 3.	0.839
G3NAR2_GASAC	G3NDK9_GASAC	ENSGACP00000002407	ENSGACP00000003409	RNA binding motif protein X-linked 2.	PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae).	0.747
G3NAR2_GASAC	G3NG36_GASAC	ENSGACP00000002407	ENSGACP00000004291	RNA binding motif protein X-linked 2.	Small nuclear ribonucleoprotein-associated protein.	0.844
G3NAR2_GASAC	G3NI70_GASAC	ENSGACP00000002407	ENSGACP00000005030	RNA binding motif protein X-linked 2.	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.878
G3NAR2_GASAC	G3NT48_GASAC	ENSGACP00000002407	ENSGACP00000008516	RNA binding motif protein X-linked 2.	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.	0.703
G3NAR2_GASAC	G3NU46_GASAC	ENSGACP00000002407	ENSGACP00000008864	RNA binding motif protein X-linked 2.	Small nuclear ribonucleoprotein Sm D2.	0.924
G3NAR2_GASAC	G3P0T9_GASAC	ENSGACP00000002407	ENSGACP00000011212	RNA binding motif protein X-linked 2.	Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family.	0.710
G3NAR2_GASAC	G3P105_GASAC	ENSGACP00000002407	ENSGACP00000011278	RNA binding motif protein X-linked 2.	Pre-mRNA processing factor 8.	0.947
G3NAR2_GASAC	G3P253_GASAC	ENSGACP00000002407	ENSGACP00000011676	RNA binding motif protein X-linked 2.	Splicing factor 3b, subunit 1.	0.994
G3NAR2_GASAC	G3P5Y3_GASAC	ENSGACP00000002407	ENSGACP00000013006	RNA binding motif protein X-linked 2.	Small nuclear ribonucleoprotein polypeptide A.	0.892
G3NAR2_GASAC	G3P5Y9_GASAC	ENSGACP00000002407	ENSGACP00000013012	RNA binding motif protein X-linked 2.	Zgc:153119.	0.797
G3NAR2_GASAC	G3P7W6_GASAC	ENSGACP00000002407	ENSGACP00000013690	RNA binding motif protein X-linked 2.	Splicing factor 3B subunit 5; Belongs to the SF3B5 family.	0.960
G3NAR2_GASAC	G3P804_GASAC	ENSGACP00000002407	ENSGACP00000013728	RNA binding motif protein X-linked 2.	LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.892
G3NAR2_GASAC	G3PA33_GASAC	ENSGACP00000002407	ENSGACP00000014457	RNA binding motif protein X-linked 2.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.922
G3NAR2_GASAC	G3PC73_GASAC	ENSGACP00000002407	ENSGACP00000015197	RNA binding motif protein X-linked 2.	Small nuclear ribonucleoprotein 200 (U5).	0.992
G3NAR2_GASAC	G3PDC6_GASAC	ENSGACP00000002407	ENSGACP00000015600	RNA binding motif protein X-linked 2.	PRP3 pre-mRNA processing factor 3 homolog (yeast).	0.932
G3NAR2_GASAC	G3PIM5_GASAC	ENSGACP00000002407	ENSGACP00000017453	RNA binding motif protein X-linked 2.	Small nuclear ribonucleoprotein polypeptide G.	0.920
G3NAR2_GASAC	G3PLX6_GASAC	ENSGACP00000002407	ENSGACP00000018607	RNA binding motif protein X-linked 2.	Small nuclear ribonucleoprotein polypeptide A.	0.966
G3NAR2_GASAC	G3PS33_GASAC	ENSGACP00000002407	ENSGACP00000020419	RNA binding motif protein X-linked 2.	PRP4 pre-mRNA processing factor 4 homolog (yeast).	0.877
G3NAR2_GASAC	G3PYQ5_GASAC	ENSGACP00000002407	ENSGACP00000022745	RNA binding motif protein X-linked 2.	LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.881