21 items (Gasterosteus aculeatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

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Others

textmining

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protein homology

Your Input:
	G3NY43_GASAC	LSM14A mRNA processing body assembly factor a. (477 aa)
	G3NU46_GASAC	Small nuclear ribonucleoprotein Sm D2. (118 aa)
	G3PIM5_GASAC	Small nuclear ribonucleoprotein polypeptide G. (43 aa)
	LSM1	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs. (136 aa)
	G3PA33_GASAC	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (92 aa)
	G3P804_GASAC	LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated. (103 aa)
	G3P6E7_GASAC	LSM family member 14B. (369 aa)
	LSM4	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (150 aa)
	LSM10	LSM10, U7 small nuclear RNA associated. (122 aa)
	G3NG36_GASAC	Small nuclear ribonucleoprotein-associated protein. (238 aa)
	LSM3	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (102 aa)
	G3NI70_GASAC	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (95 aa)
	SNRPD1	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (119 aa)
	LSM5	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (91 aa)
	LSM14A	LSM14A mRNA processing body assembly factor. (457 aa)
	LSM14B	LSM family member 14B. (389 aa)
	G3PYQ5_GASAC	LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated. (80 aa)
	G3PZX4_GASAC	Small nuclear ribonucleoprotein Sm D3. (128 aa)
	G3Q3D7_GASAC	LSM11, U7 small nuclear RNA associated. (222 aa)
	G3Q6G8_GASAC	N(alpha)-acetyltransferase 38, NatC auxiliary subunit. (108 aa)
	G3Q9D2_GASAC	Small nuclear ribonucleoprotein polypeptide F. (85 aa)

Your Current Organism:

Gasterosteus aculeatus

NCBI taxonomy Id: 69293
Other names: G. aculeatus, three spined stickleback, three-spined stickleback

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
G3NG36_GASAC	G3NI70_GASAC	ENSGACP00000004291	ENSGACP00000005030	Small nuclear ribonucleoprotein-associated protein.	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.971
G3NG36_GASAC	G3NU46_GASAC	ENSGACP00000004291	ENSGACP00000008864	Small nuclear ribonucleoprotein-associated protein.	Small nuclear ribonucleoprotein Sm D2.	0.996
G3NG36_GASAC	G3P804_GASAC	ENSGACP00000004291	ENSGACP00000013728	Small nuclear ribonucleoprotein-associated protein.	LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.970
G3NG36_GASAC	G3PA33_GASAC	ENSGACP00000004291	ENSGACP00000014457	Small nuclear ribonucleoprotein-associated protein.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.996
G3NG36_GASAC	G3PIM5_GASAC	ENSGACP00000004291	ENSGACP00000017453	Small nuclear ribonucleoprotein-associated protein.	Small nuclear ribonucleoprotein polypeptide G.	0.994
G3NG36_GASAC	G3PYQ5_GASAC	ENSGACP00000004291	ENSGACP00000022745	Small nuclear ribonucleoprotein-associated protein.	LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.958
G3NG36_GASAC	G3PZX4_GASAC	ENSGACP00000004291	ENSGACP00000023164	Small nuclear ribonucleoprotein-associated protein.	Small nuclear ribonucleoprotein Sm D3.	0.997
G3NG36_GASAC	G3Q3D7_GASAC	ENSGACP00000004291	ENSGACP00000024389	Small nuclear ribonucleoprotein-associated protein.	LSM11, U7 small nuclear RNA associated.	0.834
G3NG36_GASAC	G3Q9D2_GASAC	ENSGACP00000004291	ENSGACP00000026497	Small nuclear ribonucleoprotein-associated protein.	Small nuclear ribonucleoprotein polypeptide F.	0.995
G3NG36_GASAC	LSM1	ENSGACP00000004291	ENSGACP00000015561	Small nuclear ribonucleoprotein-associated protein.	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	0.586
G3NG36_GASAC	LSM10	ENSGACP00000004291	ENSGACP00000003029	Small nuclear ribonucleoprotein-associated protein.	LSM10, U7 small nuclear RNA associated.	0.980
G3NG36_GASAC	LSM3	ENSGACP00000004291	ENSGACP00000004564	Small nuclear ribonucleoprotein-associated protein.	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.924
G3NG36_GASAC	LSM4	ENSGACP00000004291	ENSGACP00000010798	Small nuclear ribonucleoprotein-associated protein.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.969
G3NG36_GASAC	LSM5	ENSGACP00000004291	ENSGACP00000007320	Small nuclear ribonucleoprotein-associated protein.	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	0.964
G3NG36_GASAC	SNRPD1	ENSGACP00000004291	ENSGACP00000006899	Small nuclear ribonucleoprotein-associated protein.	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	0.995
G3NI70_GASAC	G3NG36_GASAC	ENSGACP00000005030	ENSGACP00000004291	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Small nuclear ribonucleoprotein-associated protein.	0.971
G3NI70_GASAC	G3NU46_GASAC	ENSGACP00000005030	ENSGACP00000008864	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Small nuclear ribonucleoprotein Sm D2.	0.999
G3NI70_GASAC	G3NY43_GASAC	ENSGACP00000005030	ENSGACP00000010263	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	LSM14A mRNA processing body assembly factor a.	0.499
G3NI70_GASAC	G3P6E7_GASAC	ENSGACP00000005030	ENSGACP00000013170	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	LSM family member 14B.	0.499
G3NI70_GASAC	G3P804_GASAC	ENSGACP00000005030	ENSGACP00000013728	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.999