(54 nodes) PSI domain network (Gasterosteus aculeatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	G3NTA4_GASAC	Integrin beta; Belongs to the integrin beta chain family. (795 aa)
	G3NTX7_GASAC	Attractin-like 1b. (1352 aa)
	G3NKF8_GASAC	Attractin. (1269 aa)
	G3NLG6_GASAC	Semaphorin 7A; Belongs to the semaphorin family. (632 aa)
	PLXNA2	Plexin A2. (1916 aa)
	G3NII4_GASAC	Plexin b2b. (1816 aa)
	G3NHY9_GASAC	Plexin b1a. (2123 aa)
	G3NH57_GASAC	Plexin domain containing 1. (441 aa)
	G3NGW7_GASAC	Uncharacterized protein; Belongs to the semaphorin family. (813 aa)
	G3NF07_GASAC	Plexin D1. (634 aa)
	G3NDU4_GASAC	Sema domain-containing protein. (1044 aa)
	G3NAL0_GASAC	Multiple EGF-like-domains 8. (2329 aa)
	G3NAE3_GASAC	Si:ch211-113g11.6; Belongs to the semaphorin family. (647 aa)
	G3N9V8_GASAC	Integrin beta; Belongs to the integrin beta chain family. (799 aa)
	G3N9J2_GASAC	Integrin beta. (782 aa)
	G3N8N7_GASAC	Sema domain-containing protein; Belongs to the semaphorin family. (642 aa)
	G3N4Y2_GASAC	Plexin A3. (1842 aa)
	G3N3Z9_GASAC	Si:dkey-49n23.1; Belongs to the semaphorin family. (687 aa)
	PLXDC2	Plexin domain containing 2. (448 aa)
	G3NZT6_GASAC	Sema domain-containing protein. (1906 aa)
	G3P2T3_GASAC	Integrin beta; Belongs to the integrin beta chain family. (790 aa)
	G3P3G3_GASAC	MET proto-oncogene, receptor tyrosine kinase. (1429 aa)
	G3Q900_GASAC	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C; Belongs to the semaphorin family. (726 aa)
	G3Q8D1_GASAC	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Aa; Belongs to the semaphorin family. (718 aa)
	G3Q840_GASAC	Plexin A4. (1918 aa)
	G3PXZ3_GASAC	Si:ch211-106h4.6. (440 aa)
	G3P8P8_GASAC	Macrophage stimulating 1 receptor a. (1373 aa)
	G3P8Z3_GASAC	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Fa; Belongs to the semaphorin family. (819 aa)
	G3P9P0_GASAC	Sema domain-containing protein; Belongs to the semaphorin family. (794 aa)
	G3PAE2_GASAC	Plexin A2. (1915 aa)
	G3PBS4_GASAC	Plexin b1b. (2141 aa)
	G3PBV2_GASAC	Attractin-like 1a. (804 aa)
	G3PE40_GASAC	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Fb; Belongs to the semaphorin family. (749 aa)
	G3PE85_GASAC	Macrophage stimulating 1 receptor b. (1374 aa)
	G3PF09_GASAC	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Ga; Belongs to the semaphorin family. (743 aa)
	G3PGQ7_GASAC	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E; Belongs to the semaphorin family. (781 aa)
	G3PGR5_GASAC	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Ab; Belongs to the semaphorin family. (792 aa)
	G3PGT6_GASAC	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D; Belongs to the semaphorin family. (779 aa)
	G3PI55_GASAC	Sema domain-containing protein; Belongs to the semaphorin family. (816 aa)
	G3PN18_GASAC	Si:ch211-129c21.1; Belongs to the semaphorin family. (669 aa)
	G3PP74_GASAC	Sema domain-containing protein; Belongs to the semaphorin family. (508 aa)
	G3PPL1_GASAC	Sema domain-containing protein. (1047 aa)
	G3PRI5_GASAC	Semaphorin 4e; Belongs to the semaphorin family. (778 aa)
	G3PTE7_GASAC	Sema domain-containing protein. (620 aa)
	G3PVX2_GASAC	Sema domain-containing protein; Belongs to the semaphorin family. (824 aa)
	SEMA4D	Semaphorin 4D; Belongs to the semaphorin family. (556 aa)
	G3NLW2_GASAC	Plexin A1a. (1843 aa)
	G3NQA9_GASAC	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3H; Belongs to the semaphorin family. (746 aa)
	G3NQX1_GASAC	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B; Belongs to the semaphorin family. (727 aa)
	G3NR19_GASAC	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3bl; Belongs to the semaphorin family. (755 aa)
	G3NR93_GASAC	PSI domain-containing protein. (174 aa)
	G3NT92_GASAC	Integrin beta; Belongs to the integrin beta chain family. (768 aa)
	G3NZ63_GASAC	Uncharacterized protein; Belongs to the semaphorin family. (850 aa)
	G3P1C9_GASAC	Integrin beta; Belongs to the integrin beta chain family. (771 aa)

Your Current Organism:

Gasterosteus aculeatus

NCBI taxonomy Id: 69293
Other names: G. aculeatus, three spined stickleback, three-spined stickleback

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
G3N3Z9_GASAC	G3N4Y2_GASAC	ENSGACP00000000016	ENSGACP00000000352	Si:dkey-49n23.1; Belongs to the semaphorin family.	Plexin A3.	0.575
G3N3Z9_GASAC	G3NF07_GASAC	ENSGACP00000000016	ENSGACP00000003908	Si:dkey-49n23.1; Belongs to the semaphorin family.	Plexin D1.	0.603
G3N3Z9_GASAC	G3NHY9_GASAC	ENSGACP00000000016	ENSGACP00000004949	Si:dkey-49n23.1; Belongs to the semaphorin family.	Plexin b1a.	0.563
G3N3Z9_GASAC	G3NII4_GASAC	ENSGACP00000000016	ENSGACP00000005144	Si:dkey-49n23.1; Belongs to the semaphorin family.	Plexin b2b.	0.563
G3N3Z9_GASAC	G3NLW2_GASAC	ENSGACP00000000016	ENSGACP00000006325	Si:dkey-49n23.1; Belongs to the semaphorin family.	Plexin A1a.	0.575
G3N3Z9_GASAC	G3NZT6_GASAC	ENSGACP00000000016	ENSGACP00000010859	Si:dkey-49n23.1; Belongs to the semaphorin family.	Sema domain-containing protein.	0.575
G3N3Z9_GASAC	G3P3G3_GASAC	ENSGACP00000000016	ENSGACP00000012136	Si:dkey-49n23.1; Belongs to the semaphorin family.	MET proto-oncogene, receptor tyrosine kinase.	0.790
G3N3Z9_GASAC	G3P8P8_GASAC	ENSGACP00000000016	ENSGACP00000013972	Si:dkey-49n23.1; Belongs to the semaphorin family.	Macrophage stimulating 1 receptor a.	0.790
G3N3Z9_GASAC	G3PAE2_GASAC	ENSGACP00000000016	ENSGACP00000014566	Si:dkey-49n23.1; Belongs to the semaphorin family.	Plexin A2.	0.575
G3N3Z9_GASAC	G3PBS4_GASAC	ENSGACP00000000016	ENSGACP00000015048	Si:dkey-49n23.1; Belongs to the semaphorin family.	Plexin b1b.	0.563
G3N3Z9_GASAC	G3PE85_GASAC	ENSGACP00000000016	ENSGACP00000015909	Si:dkey-49n23.1; Belongs to the semaphorin family.	Macrophage stimulating 1 receptor b.	0.790
G3N3Z9_GASAC	G3PTE7_GASAC	ENSGACP00000000016	ENSGACP00000020883	Si:dkey-49n23.1; Belongs to the semaphorin family.	Sema domain-containing protein.	0.563
G3N3Z9_GASAC	G3Q840_GASAC	ENSGACP00000000016	ENSGACP00000026054	Si:dkey-49n23.1; Belongs to the semaphorin family.	Plexin A4.	0.575
G3N3Z9_GASAC	PLXNA2	ENSGACP00000000016	ENSGACP00000006255	Si:dkey-49n23.1; Belongs to the semaphorin family.	Plexin A2.	0.575
G3N4Y2_GASAC	G3N3Z9_GASAC	ENSGACP00000000352	ENSGACP00000000016	Plexin A3.	Si:dkey-49n23.1; Belongs to the semaphorin family.	0.575
G3N4Y2_GASAC	G3N8N7_GASAC	ENSGACP00000000352	ENSGACP00000001673	Plexin A3.	Sema domain-containing protein; Belongs to the semaphorin family.	0.690
G3N4Y2_GASAC	G3NAE3_GASAC	ENSGACP00000000352	ENSGACP00000002288	Plexin A3.	Si:ch211-113g11.6; Belongs to the semaphorin family.	0.766
G3N4Y2_GASAC	G3NDU4_GASAC	ENSGACP00000000352	ENSGACP00000003494	Plexin A3.	Sema domain-containing protein.	0.696
G3N4Y2_GASAC	G3NGW7_GASAC	ENSGACP00000000352	ENSGACP00000004574	Plexin A3.	Uncharacterized protein; Belongs to the semaphorin family.	0.688
G3N4Y2_GASAC	G3NLG6_GASAC	ENSGACP00000000352	ENSGACP00000006179	Plexin A3.	Semaphorin 7A; Belongs to the semaphorin family.	0.766