30 items (Gasterosteus aculeatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	G3QA52_GASAC	Ubiquitin B. (611 aa)
	G3NQJ7_GASAC	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (260 aa)
	G3NUT8_GASAC	SprT-like N-terminal domain. (431 aa)
	RCBTB1	RCC1 and BTB domain containing protein 1. (534 aa)
	G3NIR4_GASAC	Ubiquitin recognition factor in ER associated degradation 1. (310 aa)
	G3NBK9_GASAC	Replication factor C (activator 1) 4. (358 aa)
	G3N5P0_GASAC	Replication factor C (activator 1) 2. (362 aa)
	G3N487_GASAC	Replication protein A3. (122 aa)
	G3Q4U8_GASAC	Zgc:136908; Belongs to the AAA ATPase family. (810 aa)
	G3Q710_GASAC	Uncharacterized protein. (184 aa)
	RPA1	Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (610 aa)
	G3PX92_GASAC	Spermatogenesis associated 5-like 1. (733 aa)
	SPATA5	Spermatogenesis associated 5. (895 aa)
	G3PUM2_GASAC	Replication factor C subunit 1. (1105 aa)
	G3PPV9_GASAC	Regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1. (531 aa)
	G3PN45_GASAC	NPL4 homolog, ubiquitin recognition factor. (632 aa)
	G3PMB2_GASAC	Replication factor C (activator 1) 5. (340 aa)
	G3PLA5_GASAC	Replication protein A2. (274 aa)
	G3QBA9_GASAC	Replication factor C (activator 1) 3. (356 aa)
	G3PJ12_GASAC	Ring finger and CHY zinc finger domain containing 1. (265 aa)
	G3NZ68_GASAC	Ubiquitin A-52 residue ribosomal protein fusion product 1. (130 aa)
	G3P2R0_GASAC	Polymerase (DNA directed), eta. (700 aa)
	G3PFP0_GASAC	ATPase family AAA domain containing 5a. (1757 aa)
	G3PE27_GASAC	KxDL motif containing 1. (184 aa)
	G3PDZ2_GASAC	Regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2. (531 aa)
	G3PCG6_GASAC	Ribosomal protein S27a. (158 aa)
	G3P9V2_GASAC	Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (602 aa)
	G3P894_GASAC	Si:dkey-24l11.2. (479 aa)
	G3P597_GASAC	Valosin containing protein; Belongs to the AAA ATPase family. (806 aa)
	G3P3I9_GASAC	Methionine sulfoxide reductase B1b. (466 aa)

Your Current Organism:

Gasterosteus aculeatus

NCBI taxonomy Id: 69293
Other names: G. aculeatus, three spined stickleback, three-spined stickleback

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
G3N487_GASAC	G3N5P0_GASAC	ENSGACP00000000107	ENSGACP00000000614	Replication protein A3.	Replication factor C (activator 1) 2.	0.865
G3N487_GASAC	G3NBK9_GASAC	ENSGACP00000000107	ENSGACP00000002706	Replication protein A3.	Replication factor C (activator 1) 4.	0.915
G3N487_GASAC	G3NQJ7_GASAC	ENSGACP00000000107	ENSGACP00000007613	Replication protein A3.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.802
G3N487_GASAC	G3NUT8_GASAC	ENSGACP00000000107	ENSGACP00000009107	Replication protein A3.	SprT-like N-terminal domain.	0.697
G3N487_GASAC	G3P3I9_GASAC	ENSGACP00000000107	ENSGACP00000012162	Replication protein A3.	Methionine sulfoxide reductase B1b.	0.981
G3N487_GASAC	G3P9V2_GASAC	ENSGACP00000000107	ENSGACP00000014376	Replication protein A3.	Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage.	0.993
G3N487_GASAC	G3PCG6_GASAC	ENSGACP00000000107	ENSGACP00000015290	Replication protein A3.	Ribosomal protein S27a.	0.723
G3N487_GASAC	G3PFP0_GASAC	ENSGACP00000000107	ENSGACP00000016414	Replication protein A3.	ATPase family AAA domain containing 5a.	0.738
G3N487_GASAC	G3PLA5_GASAC	ENSGACP00000000107	ENSGACP00000018385	Replication protein A3.	Replication protein A2.	0.988
G3N487_GASAC	G3PMB2_GASAC	ENSGACP00000000107	ENSGACP00000018743	Replication protein A3.	Replication factor C (activator 1) 5.	0.832
G3N487_GASAC	G3PUM2_GASAC	ENSGACP00000000107	ENSGACP00000021309	Replication protein A3.	Replication factor C subunit 1.	0.769
G3N487_GASAC	G3Q710_GASAC	ENSGACP00000000107	ENSGACP00000025670	Replication protein A3.	Uncharacterized protein.	0.738
G3N487_GASAC	G3QA52_GASAC	ENSGACP00000000107	ENSGACP00000026768	Replication protein A3.	Ubiquitin B.	0.685
G3N487_GASAC	G3QBA9_GASAC	ENSGACP00000000107	ENSGACP00000027175	Replication protein A3.	Replication factor C (activator 1) 3.	0.808
G3N487_GASAC	RPA1	ENSGACP00000000107	ENSGACP00000027137	Replication protein A3.	Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage.	0.993
G3N5P0_GASAC	G3N487_GASAC	ENSGACP00000000614	ENSGACP00000000107	Replication factor C (activator 1) 2.	Replication protein A3.	0.865
G3N5P0_GASAC	G3NBK9_GASAC	ENSGACP00000000614	ENSGACP00000002706	Replication factor C (activator 1) 2.	Replication factor C (activator 1) 4.	0.999
G3N5P0_GASAC	G3NIR4_GASAC	ENSGACP00000000614	ENSGACP00000005224	Replication factor C (activator 1) 2.	Ubiquitin recognition factor in ER associated degradation 1.	0.729
G3N5P0_GASAC	G3NQJ7_GASAC	ENSGACP00000000614	ENSGACP00000007613	Replication factor C (activator 1) 2.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.999
G3N5P0_GASAC	G3NUT8_GASAC	ENSGACP00000000614	ENSGACP00000009107	Replication factor C (activator 1) 2.	SprT-like N-terminal domain.	0.777