12 items (Gasterosteus aculeatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	G3N7N0_GASAC	ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily. (639 aa)
	G3NEL7_GASAC	Dimethylarginine dimethylaminohydrolase 2. (285 aa)
	G3NTY5_GASAC	Uncharacterized protein. (254 aa)
	DDAH1	Dimethylarginine dimethylaminohydrolase 1. (282 aa)
	G3P8L2_GASAC	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily. (464 aa)
	G3PGU7_GASAC	GLOBIN domain-containing protein; Belongs to the globin family. (203 aa)
	G3PHE5_GASAC	Heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 1. (723 aa)
	G3PHH7_GASAC	Heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 2. (718 aa)
	G3Q3L0_GASAC	Sepiapterin reductase b. (267 aa)
	G3Q6H8_GASAC	Cytoglobin 2; Belongs to the globin family. (195 aa)
	G3Q7Y8_GASAC	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family. (265 aa)
	G3Q889_GASAC	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily. (481 aa)

Your Current Organism:

Gasterosteus aculeatus

NCBI taxonomy Id: 69293
Other names: G. aculeatus, three spined stickleback, three-spined stickleback

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DDAH1	G3N7N0_GASAC	ENSGACP00000008894	ENSGACP00000001313	Dimethylarginine dimethylaminohydrolase 1.	ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily.	0.400
G3N7N0_GASAC	DDAH1	ENSGACP00000001313	ENSGACP00000008894	ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily.	Dimethylarginine dimethylaminohydrolase 1.	0.400
G3N7N0_GASAC	G3NEL7_GASAC	ENSGACP00000001313	ENSGACP00000003768	ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily.	Dimethylarginine dimethylaminohydrolase 2.	0.400
G3NEL7_GASAC	G3N7N0_GASAC	ENSGACP00000003768	ENSGACP00000001313	Dimethylarginine dimethylaminohydrolase 2.	ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily.	0.400
G3NTY5_GASAC	G3P8L2_GASAC	ENSGACP00000008803	ENSGACP00000013936	Uncharacterized protein.	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily.	0.643
G3NTY5_GASAC	G3PHE5_GASAC	ENSGACP00000008803	ENSGACP00000017020	Uncharacterized protein.	Heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 1.	0.681
G3NTY5_GASAC	G3PHH7_GASAC	ENSGACP00000008803	ENSGACP00000017052	Uncharacterized protein.	Heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 2.	0.664
G3NTY5_GASAC	G3Q889_GASAC	ENSGACP00000008803	ENSGACP00000026103	Uncharacterized protein.	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily.	0.643
G3P8L2_GASAC	G3NTY5_GASAC	ENSGACP00000013936	ENSGACP00000008803	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.643
G3P8L2_GASAC	G3PHE5_GASAC	ENSGACP00000013936	ENSGACP00000017020	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily.	Heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 1.	0.804
G3P8L2_GASAC	G3PHH7_GASAC	ENSGACP00000013936	ENSGACP00000017052	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily.	Heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 2.	0.804
G3P8L2_GASAC	G3Q3L0_GASAC	ENSGACP00000013936	ENSGACP00000024462	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily.	Sepiapterin reductase b.	0.643
G3PHE5_GASAC	G3NTY5_GASAC	ENSGACP00000017020	ENSGACP00000008803	Heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 1.	Uncharacterized protein.	0.681
G3PHE5_GASAC	G3P8L2_GASAC	ENSGACP00000017020	ENSGACP00000013936	Heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 1.	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily.	0.804
G3PHE5_GASAC	G3Q3L0_GASAC	ENSGACP00000017020	ENSGACP00000024462	Heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 1.	Sepiapterin reductase b.	0.665
G3PHE5_GASAC	G3Q889_GASAC	ENSGACP00000017020	ENSGACP00000026103	Heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 1.	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily.	0.804
G3PHH7_GASAC	G3NTY5_GASAC	ENSGACP00000017052	ENSGACP00000008803	Heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 2.	Uncharacterized protein.	0.664
G3PHH7_GASAC	G3P8L2_GASAC	ENSGACP00000017052	ENSGACP00000013936	Heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 2.	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily.	0.804
G3PHH7_GASAC	G3Q3L0_GASAC	ENSGACP00000017052	ENSGACP00000024462	Heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 2.	Sepiapterin reductase b.	0.664
G3PHH7_GASAC	G3Q889_GASAC	ENSGACP00000017052	ENSGACP00000026103	Heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 2.	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily.	0.805