STRINGSTRING
SRSF1 SRSF1 G3PA33_GASAC G3PA33_GASAC G3PAP2_GASAC G3PAP2_GASAC G3PC73_GASAC G3PC73_GASAC G3PFA2_GASAC G3PFA2_GASAC G3PGP0_GASAC G3PGP0_GASAC G3PIM5_GASAC G3PIM5_GASAC POLR2E POLR2E G3PLI3_GASAC G3PLI3_GASAC PDCD7 PDCD7 G3PPW2_GASAC G3PPW2_GASAC G3PQJ2_GASAC G3PQJ2_GASAC G3PR20_GASAC G3PR20_GASAC G3PV24_GASAC G3PV24_GASAC NCBP1 NCBP1 G3PXP1_GASAC G3PXP1_GASAC G3PZX4_GASAC G3PZX4_GASAC G3Q0L5_GASAC G3Q0L5_GASAC G3Q0R5_GASAC G3Q0R5_GASAC G3Q4Y1_GASAC G3Q4Y1_GASAC G3Q5I4_GASAC G3Q5I4_GASAC G3Q6T9_GASAC G3Q6T9_GASAC YBX2 YBX2 G3Q9D2_GASAC G3Q9D2_GASAC G3QBM3_GASAC G3QBM3_GASAC G3P7W6_GASAC G3P7W6_GASAC G3P5P1_GASAC G3P5P1_GASAC G3P3L5_GASAC G3P3L5_GASAC G3P2V6_GASAC G3P2V6_GASAC G3P253_GASAC G3P253_GASAC G3P105_GASAC G3P105_GASAC G3P0T9_GASAC G3P0T9_GASAC G3NWJ8_GASAC G3NWJ8_GASAC G3NUU9_GASAC G3NUU9_GASAC G3NU46_GASAC G3NU46_GASAC G3NU38_GASAC G3NU38_GASAC G3NT55_GASAC G3NT55_GASAC G3NSE6_GASAC G3NSE6_GASAC G3NQ98_GASAC G3NQ98_GASAC SNRPD1 SNRPD1 G3NLZ7_GASAC G3NLZ7_GASAC G3NLB5_GASAC G3NLB5_GASAC G3NI77_GASAC G3NI77_GASAC G3NG72_GASAC G3NG72_GASAC G3NG36_GASAC G3NG36_GASAC G3NFF6_GASAC G3NFF6_GASAC G3NF69_GASAC G3NF69_GASAC G3NDR5_GASAC G3NDR5_GASAC G3NDK9_GASAC G3NDK9_GASAC G3NC28_GASAC G3NC28_GASAC G3NBG7_GASAC G3NBG7_GASAC G3N9B9_GASAC G3N9B9_GASAC G3N5K7_GASAC G3N5K7_GASAC
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
SRSF1Serine and arginine rich splicing factor 1. (237 aa)
G3PA33_GASACSmall nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (92 aa)
G3PAP2_GASACUncharacterized protein. (186 aa)
G3PC73_GASACSmall nuclear ribonucleoprotein 200 (U5). (2147 aa)
G3PFA2_GASACUncharacterized protein. (271 aa)
G3PGP0_GASACTranscription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (537 aa)
G3PIM5_GASACSmall nuclear ribonucleoprotein polypeptide G. (43 aa)
POLR2ERNA polymerase II subunit E. (210 aa)
G3PLI3_GASACSmall nuclear ribonucleoprotein 25. (159 aa)
PDCD7Programmed cell death 7. (461 aa)
G3PPW2_GASACRRM domain-containing protein. (253 aa)
G3PQJ2_GASACZinc finger (CCCH type), RNA-binding motif and serine/arginine rich 2. (574 aa)
G3PR20_GASACGeneral transcription factor IIF subunit 2; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. This subunit shows ATP-dependent DNA-helicase activity. (276 aa)
G3PV24_GASACDNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1179 aa)
NCBP1Nuclear cap binding protein subunit 1. (810 aa)
G3PXP1_GASACZinc finger, matrin-type 5. (165 aa)
G3PZX4_GASACSmall nuclear ribonucleoprotein Sm D3. (128 aa)
G3Q0L5_GASACPolymerase (RNA) II (DNA directed) polypeptide G-like. (172 aa)
G3Q0R5_GASACCHHC U11-48K-type domain-containing protein. (335 aa)
G3Q4Y1_GASACZinc finger CCHC-type and RNA binding motif 1. (222 aa)
G3Q5I4_GASACSplicing factor 3b, subunit 2. (655 aa)
G3Q6T9_GASACDNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1653 aa)
YBX2Y-box binding protein 2. (322 aa)
G3Q9D2_GASACSmall nuclear ribonucleoprotein polypeptide F. (85 aa)
G3QBM3_GASACSmall nuclear ribonucleoprotein 35 (U11/U12). (232 aa)
G3P7W6_GASACSplicing factor 3B subunit 5; Belongs to the SF3B5 family. (86 aa)
G3P5P1_GASACDEAD (Asp-Glu-Ala-Asp) box helicase 42. (876 aa)
G3P3L5_GASACElongation factor Tu GTP binding domain containing 2. (971 aa)
G3P2V6_GASACDNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (150 aa)
G3P253_GASACSplicing factor 3b, subunit 1. (1312 aa)
G3P105_GASACPre-mRNA processing factor 8. (2344 aa)
G3P0T9_GASACThioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (142 aa)
G3NWJ8_GASACPolymerase (RNA) II (DNA directed) polypeptide F. (127 aa)
G3NUU9_GASACGeneral transcription factor IIF subunit 2; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. This subunit shows ATP-dependent DNA-helicase activity. (265 aa)
G3NU46_GASACSmall nuclear ribonucleoprotein Sm D2. (118 aa)
G3NU38_GASACDNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (126 aa)
G3NT55_GASACY box binding protein 1. (304 aa)
G3NSE6_GASACNuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...] (165 aa)
G3NQ98_GASACSmall nuclear ribonucleoprotein 40 (U5). (377 aa)
SNRPD1Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (119 aa)
G3NLZ7_GASACSplicing factor 3b, subunit 6. (125 aa)
G3NLB5_GASACPolymerase (RNA) II (DNA directed) polypeptide D. (144 aa)
G3NI77_GASACSplicing factor 3b, subunit 4. (395 aa)
G3NG72_GASACPolymerase (RNA) II (DNA directed) polypeptide J. (117 aa)
G3NG36_GASACSmall nuclear ribonucleoprotein-associated protein. (238 aa)
G3NFF6_GASACSerine and arginine rich splicing factor 2a. (200 aa)
G3NF69_GASACDEAD (Asp-Glu-Ala-Asp) box polypeptide 23; Belongs to the DEAD box helicase family. (791 aa)
G3NDR5_GASACSplicing factor 3b, subunit 3. (1218 aa)
G3NDK9_GASACPRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae). (939 aa)
G3NC28_GASACPolymerase (RNA) II (DNA directed) polypeptide C. (275 aa)
G3NBG7_GASACRNA-binding region (RNP1, RRM) containing 3. (517 aa)
G3N9B9_GASACRRM domain-containing protein. (158 aa)
G3N5K7_GASACSmall nuclear ribonucleoprotein 70 (U1). (390 aa)
Your Current Organism:
Gasterosteus aculeatus
NCBI taxonomy Id: 69293
Other names: G. aculeatus, three spined stickleback, three-spined stickleback
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