78 items (Gasterosteus aculeatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	G3N8J1_GASAC	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (103 aa)
	ENSGACP00000000567	annotation not available (103 aa)
	G3NDG2_GASAC	Histone H2B; Belongs to the histone H2B family. (123 aa)
	G3PPU5_GASAC	Histone H2A; Belongs to the histone H2A family. (127 aa)
	G3N8J7_GASAC	Histone H2A; Belongs to the histone H2A family. (128 aa)
	ENSGACP00000001626	annotation not available (103 aa)
	G3N8I9_GASAC	Histone H2B; Belongs to the histone H2B family. (123 aa)
	G3N831_GASAC	Histone H2A; Belongs to the histone H2A family. (127 aa)
	G3N752_GASAC	Histone H2A; Belongs to the histone H2A family. (149 aa)
	G3N8L2_GASAC	Histone H2A; Belongs to the histone H2A family. (130 aa)
	ENSGACP00000001646	annotation not available (123 aa)
	ENSGACP00000001656	annotation not available (130 aa)
	G3N8M2_GASAC	Histone H2B; Belongs to the histone H2B family. (134 aa)
	ENSGACP00000001659	annotation not available (103 aa)
	G3NAQ4_GASAC	Death-domain associated protein. (725 aa)
	G3NBG0_GASAC	Histone H2A; Belongs to the histone H2A family. (134 aa)
	G3NBG6_GASAC	Histone H2B; Belongs to the histone H2B family. (131 aa)
	ENSGACP00000002671	annotation not available (103 aa)
	G3NBJ4_GASAC	Histone H2A; Belongs to the histone H2A family. (141 aa)
	G3NBK1_GASAC	Histone H2B; Belongs to the histone H2B family. (132 aa)
	ENSGACP00000002703	annotation not available (103 aa)
	G3NBK7_GASAC	Histone H2B; Belongs to the histone H2B family. (135 aa)
	G3NBJ8_GASAC	Histone H2A; Belongs to the histone H2A family. (132 aa)
	ENSGACP00000002721	annotation not available (103 aa)
	ENSGACP00000002726	annotation not available (123 aa)
	G3NDF7_GASAC	Histone H2A; Belongs to the histone H2A family. (132 aa)
	ENSGACP00000003362	annotation not available (123 aa)
	ENSGACP00000003371	Histone 1, H4, like. (103 aa)
	G3NDH3_GASAC	Histone H2B; Belongs to the histone H2B family. (136 aa)
	ENSGACP00000003380	annotation not available (103 aa)
	G3NDJ7_GASAC	Histone H2A; Belongs to the histone H2A family. (148 aa)
	G3NDX4_GASAC	Histone H2A; Belongs to the histone H2A family. (134 aa)
	G3NDY0_GASAC	Histone H2B; Belongs to the histone H2B family. (132 aa)
	ENSGACP00000003537	annotation not available (103 aa)
	ENSGACP00000003542	annotation not available (103 aa)
	ENSGACP00000003554	annotation not available (134 aa)
	G3NE08_GASAC	Histone H2B; Belongs to the histone H2B family. (135 aa)
	ENSGACP00000003570	annotation not available (103 aa)
	ENSGACP00000003576	Histone 1, H4, like. (103 aa)
	G3NE31_GASAC	Histone H2B; Belongs to the histone H2B family. (153 aa)
	ENSGACP00000003591	annotation not available (123 aa)
	G3NE41_GASAC	Histone H2A; Belongs to the histone H2A family. (128 aa)
	G3NE97_GASAC	HTH myb-type domain-containing protein. (174 aa)
	ENSGACP00000003693	annotation not available (103 aa)
	G3NEE3_GASAC	Histone H2A; Belongs to the histone H2A family. (133 aa)
	ENSGACP00000003714	annotation not available (103 aa)
	ENSGACP00000003717	annotation not available (123 aa)
	G3NEH3_GASAC	Histone H2A; Belongs to the histone H2A family. (134 aa)
	ENSGACP00000003730	annotation not available (103 aa)
	G3NEJ0_GASAC	Histone H2A; Belongs to the histone H2A family. (126 aa)
	ENSGACP00000003748	annotation not available (123 aa)
	G3P1T0_GASAC	Protection of telomeres 1 homolog. (785 aa)
	G3P521_GASAC	Histone H2A; Belongs to the histone H2A family. (138 aa)
	G3P8K1_GASAC	Histone H2B; Belongs to the histone H2B family. (123 aa)
	G3P8K7_GASAC	Histone H2A; Belongs to the histone H2A family. (124 aa)
	G3P8L4_GASAC	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (103 aa)
	ENSGACP00000018374	annotation not available (103 aa)
	G3PL99_GASAC	Histone H2B; Belongs to the histone H2B family. (125 aa)
	ENSGACP00000018382	annotation not available (103 aa)
	ENSGACP00000018387	annotation not available (125 aa)
	G3PLB2_GASAC	Histone H2A; Belongs to the histone H2A family. (128 aa)
	ENSGACP00000018399	annotation not available (103 aa)
	G3PLM8_GASAC	Histone H2A; Belongs to the histone H2A family. (134 aa)
	G3PLN1_GASAC	Histone domain-containing protein; Belongs to the histone H2B family. (123 aa)
	G3PNW6_GASAC	Histone H2A; Belongs to the histone H2A family. (128 aa)
	ENSGACP00000019630	annotation not available (127 aa)
	G3PPU7_GASAC	Histone H2B; Belongs to the histone H2B family. (131 aa)
	ENSGACP00000019637	annotation not available (103 aa)
	ENSGACP00000001644	annotation not available (103 aa)
	G3PT01_GASAC	Histone H2A; Belongs to the histone H2A family. (147 aa)
	G3PV88_GASAC	HTH myb-type domain-containing protein. (563 aa)
	G3Q1H8_GASAC	Histone H2B; Belongs to the histone H2B family. (120 aa)
	G3Q2I8_GASAC	ATRX chromatin remodeler. (2112 aa)
	G3Q651_GASAC	TINF2_N domain-containing protein. (215 aa)
	G3Q653_GASAC	Uncharacterized protein. (184 aa)
	G3QAH0_GASAC	Uncharacterized protein. (2286 aa)
	G3QAS2_GASAC	Histone H2A; Belongs to the histone H2A family. (144 aa)
	G3NEE5_GASAC	Histone H2A; Belongs to the histone H2A family. (131 aa)

Your Current Organism:

Gasterosteus aculeatus

NCBI taxonomy Id: 69293
Other names: G. aculeatus, three spined stickleback, three-spined stickleback

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSGACP00000000567	ENSGACP00000001626	ENSGACP00000000567	ENSGACP00000001626	annotation not available	annotation not available	0.923
ENSGACP00000000567	ENSGACP00000001644	ENSGACP00000000567	ENSGACP00000001644	annotation not available	annotation not available	0.923
ENSGACP00000000567	ENSGACP00000001646	ENSGACP00000000567	ENSGACP00000001646	annotation not available	annotation not available	0.610
ENSGACP00000000567	ENSGACP00000001656	ENSGACP00000000567	ENSGACP00000001656	annotation not available	annotation not available	0.679
ENSGACP00000000567	ENSGACP00000001659	ENSGACP00000000567	ENSGACP00000001659	annotation not available	annotation not available	0.923
ENSGACP00000000567	ENSGACP00000002671	ENSGACP00000000567	ENSGACP00000002671	annotation not available	annotation not available	0.457
ENSGACP00000000567	ENSGACP00000002703	ENSGACP00000000567	ENSGACP00000002703	annotation not available	annotation not available	0.923
ENSGACP00000000567	ENSGACP00000002721	ENSGACP00000000567	ENSGACP00000002721	annotation not available	annotation not available	0.458
ENSGACP00000000567	ENSGACP00000002726	ENSGACP00000000567	ENSGACP00000002726	annotation not available	annotation not available	0.616
ENSGACP00000000567	ENSGACP00000003362	ENSGACP00000000567	ENSGACP00000003362	annotation not available	annotation not available	0.619
ENSGACP00000000567	ENSGACP00000003371	ENSGACP00000000567	ENSGACP00000003371	annotation not available	Histone 1, H4, like.	0.923
ENSGACP00000000567	ENSGACP00000003380	ENSGACP00000000567	ENSGACP00000003380	annotation not available	annotation not available	0.923
ENSGACP00000000567	ENSGACP00000003537	ENSGACP00000000567	ENSGACP00000003537	annotation not available	annotation not available	0.923
ENSGACP00000000567	ENSGACP00000003542	ENSGACP00000000567	ENSGACP00000003542	annotation not available	annotation not available	0.923
ENSGACP00000000567	ENSGACP00000003554	ENSGACP00000000567	ENSGACP00000003554	annotation not available	annotation not available	0.667
ENSGACP00000000567	ENSGACP00000003570	ENSGACP00000000567	ENSGACP00000003570	annotation not available	annotation not available	0.923
ENSGACP00000000567	ENSGACP00000003576	ENSGACP00000000567	ENSGACP00000003576	annotation not available	Histone 1, H4, like.	0.923
ENSGACP00000000567	ENSGACP00000003591	ENSGACP00000000567	ENSGACP00000003591	annotation not available	annotation not available	0.618
ENSGACP00000000567	ENSGACP00000003693	ENSGACP00000000567	ENSGACP00000003693	annotation not available	annotation not available	0.923
ENSGACP00000000567	ENSGACP00000003717	ENSGACP00000000567	ENSGACP00000003717	annotation not available	annotation not available	0.618