15 items (Gasterosteus aculeatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	G3P804_GASAC	LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated. (103 aa)
	LSM10	LSM10, U7 small nuclear RNA associated. (122 aa)
	G3NG36_GASAC	Small nuclear ribonucleoprotein-associated protein. (238 aa)
	LSM3	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (102 aa)
	G3NI70_GASAC	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (95 aa)
	SNRPD1	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (119 aa)
	LSM5	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (91 aa)
	G3NU46_GASAC	Small nuclear ribonucleoprotein Sm D2. (118 aa)
	LSM4	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (150 aa)
	G3PA33_GASAC	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (92 aa)
	LSM1	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs. (136 aa)
	G3PYQ5_GASAC	LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated. (80 aa)
	G3PZX4_GASAC	Small nuclear ribonucleoprotein Sm D3. (128 aa)
	G3Q6G8_GASAC	N(alpha)-acetyltransferase 38, NatC auxiliary subunit. (108 aa)
	G3Q9D2_GASAC	Small nuclear ribonucleoprotein polypeptide F. (85 aa)

Your Current Organism:

Gasterosteus aculeatus

NCBI taxonomy Id: 69293
Other names: G. aculeatus, three spined stickleback, three-spined stickleback

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
G3NG36_GASAC	G3NI70_GASAC	ENSGACP00000004291	ENSGACP00000005030	Small nuclear ribonucleoprotein-associated protein.	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.971
G3NG36_GASAC	G3NU46_GASAC	ENSGACP00000004291	ENSGACP00000008864	Small nuclear ribonucleoprotein-associated protein.	Small nuclear ribonucleoprotein Sm D2.	0.996
G3NG36_GASAC	G3P804_GASAC	ENSGACP00000004291	ENSGACP00000013728	Small nuclear ribonucleoprotein-associated protein.	LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.970
G3NG36_GASAC	G3PA33_GASAC	ENSGACP00000004291	ENSGACP00000014457	Small nuclear ribonucleoprotein-associated protein.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.996
G3NG36_GASAC	G3PYQ5_GASAC	ENSGACP00000004291	ENSGACP00000022745	Small nuclear ribonucleoprotein-associated protein.	LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.958
G3NG36_GASAC	G3PZX4_GASAC	ENSGACP00000004291	ENSGACP00000023164	Small nuclear ribonucleoprotein-associated protein.	Small nuclear ribonucleoprotein Sm D3.	0.997
G3NG36_GASAC	G3Q9D2_GASAC	ENSGACP00000004291	ENSGACP00000026497	Small nuclear ribonucleoprotein-associated protein.	Small nuclear ribonucleoprotein polypeptide F.	0.995
G3NG36_GASAC	LSM1	ENSGACP00000004291	ENSGACP00000015561	Small nuclear ribonucleoprotein-associated protein.	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	0.586
G3NG36_GASAC	LSM10	ENSGACP00000004291	ENSGACP00000003029	Small nuclear ribonucleoprotein-associated protein.	LSM10, U7 small nuclear RNA associated.	0.980
G3NG36_GASAC	LSM3	ENSGACP00000004291	ENSGACP00000004564	Small nuclear ribonucleoprotein-associated protein.	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.924
G3NG36_GASAC	LSM4	ENSGACP00000004291	ENSGACP00000010798	Small nuclear ribonucleoprotein-associated protein.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.969
G3NG36_GASAC	LSM5	ENSGACP00000004291	ENSGACP00000007320	Small nuclear ribonucleoprotein-associated protein.	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	0.964
G3NG36_GASAC	SNRPD1	ENSGACP00000004291	ENSGACP00000006899	Small nuclear ribonucleoprotein-associated protein.	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	0.995
G3NI70_GASAC	G3NG36_GASAC	ENSGACP00000005030	ENSGACP00000004291	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Small nuclear ribonucleoprotein-associated protein.	0.971
G3NI70_GASAC	G3NU46_GASAC	ENSGACP00000005030	ENSGACP00000008864	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Small nuclear ribonucleoprotein Sm D2.	0.999
G3NI70_GASAC	G3P804_GASAC	ENSGACP00000005030	ENSGACP00000013728	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.999
G3NI70_GASAC	G3PA33_GASAC	ENSGACP00000005030	ENSGACP00000014457	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.998
G3NI70_GASAC	G3PYQ5_GASAC	ENSGACP00000005030	ENSGACP00000022745	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.999
G3NI70_GASAC	G3PZX4_GASAC	ENSGACP00000005030	ENSGACP00000023164	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Small nuclear ribonucleoprotein Sm D3.	0.991
G3NI70_GASAC	G3Q6G8_GASAC	ENSGACP00000005030	ENSGACP00000025478	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	N(alpha)-acetyltransferase 38, NatC auxiliary subunit.	0.960