(20 nodes) Mixed, incl. tRNA 3-terminal CCA addition, and RNA exonuclease REXO1/REXO3/REXO4-like network (Chara braunii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CBR_g18657	RNB domain-containing protein. (290 aa)
	CBR_g18665	Uncharacterized protein. (285 aa)
	CBR_g40920	PolyA_pol domain-containing protein; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family. (192 aa)
	CBR_g40916	PolyA_pol domain-containing protein; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family. (136 aa)
	CBR_g40915	Uncharacterized protein. (339 aa)
	CBR_g72631	RNB domain-containing protein. (851 aa)
	CBR_g78798	Exonuclease domain-containing protein. (2045 aa)
	CBR_g3548	Uncharacterized protein; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family. (1373 aa)
	CBR_g3702	Str_synth domain-containing protein. (443 aa)
	CBR_g3977	DIS3-like exonuclease 2; 3'-5'-exoribonuclease that specifically recognizes RNAs polyuridylated at their 3' end and mediates their degradation. Component of an exosome-independent RNA degradation pathway that mediates degradation of cytoplasmic mRNAs that have been deadenylated and subsequently uridylated at their 3'. (1386 aa)
	CBR_g5744	S1 motif domain-containing protein. (1106 aa)
	CBR_g16947	Exonuclease domain-containing protein. (591 aa)
	CBR_g21009	Uncharacterized protein. (1331 aa)
	CBR_g30163	KH domain-containing protein. (1343 aa)
	CBR_g34623	Str_synth domain-containing protein. (206 aa)
	CBR_g34969	Uncharacterized protein; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family. (736 aa)
	CBR_g37123	Exonuclease domain-containing protein. (540 aa)
	CBR_g39514	Exonuclease domain-containing protein. (594 aa)
	CBR_g44401	Str_synth domain-containing protein. (367 aa)
	CBR_g55864	S1 motif domain-containing protein. (1173 aa)

Your Current Organism:

Chara braunii

NCBI taxonomy Id: 69332
Other names: C. braunii

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CBR_g16947	CBR_g18657	A0A388KU62	A0A388JTE7	Exonuclease domain-containing protein.	RNB domain-containing protein.	0.735
CBR_g16947	CBR_g18665	A0A388KU62	A0A388JTJ1	Exonuclease domain-containing protein.	Uncharacterized protein.	0.735
CBR_g16947	CBR_g30163	A0A388KU62	A0A388LC68	Exonuclease domain-containing protein.	KH domain-containing protein.	0.726
CBR_g16947	CBR_g34623	A0A388KU62	A0A388LJ44	Exonuclease domain-containing protein.	Str_synth domain-containing protein.	0.726
CBR_g16947	CBR_g34969	A0A388KU62	A0A388LJU0	Exonuclease domain-containing protein.	Uncharacterized protein; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.	0.486
CBR_g16947	CBR_g3548	A0A388KU62	A0A388KFM2	Exonuclease domain-containing protein.	Uncharacterized protein; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.	0.486
CBR_g16947	CBR_g3702	A0A388KU62	A0A388KGA2	Exonuclease domain-containing protein.	Str_synth domain-containing protein.	0.726
CBR_g16947	CBR_g39514	A0A388KU62	A0A388LS10	Exonuclease domain-containing protein.	Exonuclease domain-containing protein.	0.755
CBR_g16947	CBR_g3977	A0A388KU62	A0A388KGY7	Exonuclease domain-containing protein.	DIS3-like exonuclease 2; 3'-5'-exoribonuclease that specifically recognizes RNAs polyuridylated at their 3' end and mediates their degradation. Component of an exosome-independent RNA degradation pathway that mediates degradation of cytoplasmic mRNAs that have been deadenylated and subsequently uridylated at their 3'.	0.737
CBR_g16947	CBR_g40915	A0A388KU62	A0A388K2G9	Exonuclease domain-containing protein.	Uncharacterized protein.	0.486
CBR_g16947	CBR_g40916	A0A388KU62	A0A388K2E7	Exonuclease domain-containing protein.	PolyA_pol domain-containing protein; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.	0.486
CBR_g16947	CBR_g40920	A0A388KU62	A0A388K2E0	Exonuclease domain-containing protein.	PolyA_pol domain-containing protein; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.	0.486
CBR_g16947	CBR_g44401	A0A388KU62	A0A388LXA1	Exonuclease domain-containing protein.	Str_synth domain-containing protein.	0.726
CBR_g16947	CBR_g55864	A0A388KU62	A0A388MDI3	Exonuclease domain-containing protein.	S1 motif domain-containing protein.	0.726
CBR_g16947	CBR_g5744	A0A388KU62	A0A388KJ89	Exonuclease domain-containing protein.	S1 motif domain-containing protein.	0.726
CBR_g16947	CBR_g72631	A0A388KU62	A0A388K9Z0	Exonuclease domain-containing protein.	RNB domain-containing protein.	0.735
CBR_g18657	CBR_g16947	A0A388JTE7	A0A388KU62	RNB domain-containing protein.	Exonuclease domain-containing protein.	0.735
CBR_g18657	CBR_g21009	A0A388JTE7	A0A388L0E5	RNB domain-containing protein.	Uncharacterized protein.	0.735
CBR_g18657	CBR_g30163	A0A388JTE7	A0A388LC68	RNB domain-containing protein.	KH domain-containing protein.	0.752
CBR_g18657	CBR_g34623	A0A388JTE7	A0A388LJ44	RNB domain-containing protein.	Str_synth domain-containing protein.	0.752