(72 nodes) Mixed, incl. Nucleobase-containing compound kinase activity, and Metabolism of nucleotides network (Chara braunii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CBR_g232	Uncharacterized protein. (635 aa)
	CBR_g32232	Obg-like ATPase 1; Hydrolyzes ATP, and can also hydrolyze GTP with lower efficiency. Has lower affinity for GTP. (400 aa)
	CBR_g5640	VWFA domain-containing protein. (1526 aa)
	CBR_g8628	Glutaredoxin domain-containing protein. (236 aa)
	CBR_g16012	HD domain-containing protein. (1104 aa)
	CBR_g19230	Folate gamma-glutamyl hydrolase. (1221 aa)
	CBR_g19759	Uncharacterized protein. (142 aa)
	CBR_g23794	A_deaminase domain-containing protein. (1072 aa)
	CBR_g30299	Thymidylate_kin domain-containing protein. (252 aa)
	CBR_g30796	Uncharacterized protein. (630 aa)
	CBR_g31274	Uncharacterized protein; Belongs to the adenylate kinase family. (340 aa)
	CBR_g34312	Pribosyltran domain-containing protein. (314 aa)
	CBR_g38956	Pribosyltran domain-containing protein. (310 aa)
	CBR_g39008	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis. (345 aa)
	CBR_g45244	Ribonuclease; Cytoprotective ribonuclease (RNase) required for resistance to abiotic stresses, acting as a positive regulator of mRNA decapping during stress. (1024 aa)
	CBR_g50339	Glutaredoxin domain-containing protein. (278 aa)
	CBR_g61471	Uncharacterized protein. (502 aa)
	CBR_g61480	Pterin-binding domain-containing protein. (682 aa)
	CBR_g3995	GTP_cyclohydro2 domain-containing protein. (670 aa)
	CBR_g4634	Uncharacterized protein. (1357 aa)
	CBR_g4649	Nucleoside diphosphate kinase. (142 aa)
	CBR_g4807	Uncharacterized protein. (694 aa)
	CBR_g4816	Guanylate kinase-like domain-containing protein. (227 aa)
	CBR_g11013	Guanylate kinase-like domain-containing protein. (528 aa)
	CBR_g12157	Uncharacterized protein. (100 aa)
	CBR_g12153	Uncharacterized protein. (1430 aa)
	CBR_g12914	D-aminoacyl-tRNA deacylase. (181 aa)
	CBR_g17592	TTC5_OB domain-containing protein. (375 aa)
	CBR_g18739	Mur_ligase_M domain-containing protein. (732 aa)
	CBR_g18876	Glutaredoxin domain-containing protein. (136 aa)
	CBR_g19562	Uncharacterized protein. (559 aa)
	CBR_g21226	CMP/dCMP-type deaminase domain-containing protein. (805 aa)
	CBR_g21266	dUTPase domain-containing protein. (226 aa)
	CBR_g21272	dUTPase domain-containing protein. (224 aa)
	CBR_g22296	PfkB domain-containing protein. (340 aa)
	CBR_g22884	Uncharacterized protein; Belongs to the GDA1/CD39 NTPase family. (629 aa)
	CBR_g23439	Uncharacterized protein. (688 aa)
	CBR_g26184	Nudix hydrolase domain-containing protein; Belongs to the Nudix hydrolase family. (232 aa)
	CBR_g26292	Uncharacterized protein. (225 aa)
	CBR_g29269	Uncharacterized protein. (411 aa)
	CBR_g29684	Uncharacterized protein. (796 aa)
	CBR_g30249	POLIIIAc domain-containing protein. (1537 aa)
	CBR_g30467	Inosine-5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. (512 aa)
	CBR_g30924	Uncharacterized protein. (733 aa)
	CBR_g32572	Glutaredoxin domain-containing protein. (108 aa)
	CBR_g34141	ADK_lid domain-containing protein; Belongs to the adenylate kinase family. (240 aa)
	CBR_g36390	DM10 domain-containing protein. (392 aa)
	CBR_g36747	Uncharacterized protein. (366 aa)
	CBR_g37166	Uncharacterized protein. (974 aa)
	CBR_g39345	CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. (604 aa)
	CBR_g41058	Uncharacterized protein. (330 aa)
	CBR_g41085	DUF1995 domain-containing protein. (205 aa)
	CBR_g41087	Uncharacterized protein; Belongs to the adenylate kinase family. (585 aa)
	CBR_g41676	Uncharacterized protein. (360 aa)
	CBR_g41813	NDK domain-containing protein; Belongs to the NDK family. (636 aa)
	CBR_g45417	3-methyl-2-oxobutanoate hydroxymethyltransferase; Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha- ketoisovalerate to form ketopantoate. (707 aa)
	CBR_g45972	Nudix hydrolase domain-containing protein. (566 aa)
	CBR_g46449	RRM domain-containing protein. (749 aa)
	CBR_g47955	Uncharacterized protein. (853 aa)
	CBR_g48399	Uncharacterized protein. (556 aa)
	CBR_g48984	NDK domain-containing protein; Belongs to the NDK family. (212 aa)
	CBR_g49195	Uncharacterized protein. (970 aa)
	CBR_g49288	Uncharacterized protein. (77 aa)
	CBR_g49287	Uncharacterized protein. (70 aa)
	CBR_g50406	UMP-CMP kinase; Catalyzes the phosphorylation of pyrimidine nucleoside monophosphates at the expense of ATP. Plays an important role in de novo pyrimidine nucleotide biosynthesis. Has preference for UMP and CMP as phosphate acceptors; Belongs to the adenylate kinase family. UMP-CMP kinase subfamily. (581 aa)
	CBR_g50398	Uncharacterized protein. (197 aa)
	CBR_g50851	Thymidylate_kin domain-containing protein. (476 aa)
	CBR_g50929	NDK domain-containing protein. (200 aa)
	CBR_g51264	Uncharacterized protein. (202 aa)
	CBR_g52218	Uncharacterized protein; Belongs to the GDA1/CD39 NTPase family. (459 aa)
	CBR_g52642	Ribonucleoside-diphosphate reductase; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides. (800 aa)
	CBR_g65247	NDK domain-containing protein. (38 aa)

Your Current Organism:

Chara braunii

NCBI taxonomy Id: 69332
Other names: C. braunii

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CBR_g11013	CBR_g12153	A0A388KPV4	A0A388KRD1	Guanylate kinase-like domain-containing protein.	Uncharacterized protein.	0.653
CBR_g11013	CBR_g12157	A0A388KPV4	A0A388KR99	Guanylate kinase-like domain-containing protein.	Uncharacterized protein.	0.661
CBR_g11013	CBR_g16012	A0A388KPV4	A0A388JT57	Guanylate kinase-like domain-containing protein.	HD domain-containing protein.	0.653
CBR_g11013	CBR_g17592	A0A388KPV4	A0A388KUY8	Guanylate kinase-like domain-containing protein.	TTC5_OB domain-containing protein.	0.634
CBR_g11013	CBR_g21266	A0A388KPV4	A0A388L126	Guanylate kinase-like domain-containing protein.	dUTPase domain-containing protein.	0.550
CBR_g11013	CBR_g21272	A0A388KPV4	A0A388L1C6	Guanylate kinase-like domain-containing protein.	dUTPase domain-containing protein.	0.550
CBR_g11013	CBR_g22296	A0A388KPV4	A0A388L2R5	Guanylate kinase-like domain-containing protein.	PfkB domain-containing protein.	0.598
CBR_g11013	CBR_g22884	A0A388KPV4	A0A388L2Y2	Guanylate kinase-like domain-containing protein.	Uncharacterized protein; Belongs to the GDA1/CD39 NTPase family.	0.817
CBR_g11013	CBR_g232	A0A388KPV4	A0A388JM95	Guanylate kinase-like domain-containing protein.	Uncharacterized protein.	0.843
CBR_g11013	CBR_g23439	A0A388KPV4	A0A388L480	Guanylate kinase-like domain-containing protein.	Uncharacterized protein.	0.638
CBR_g11013	CBR_g26292	A0A388KPV4	A0A388L7F8	Guanylate kinase-like domain-containing protein.	Uncharacterized protein.	0.829
CBR_g11013	CBR_g30299	A0A388KPV4	A0A388JX36	Guanylate kinase-like domain-containing protein.	Thymidylate_kin domain-containing protein.	0.565
CBR_g11013	CBR_g30467	A0A388KPV4	A0A388LCS6	Guanylate kinase-like domain-containing protein.	Inosine-5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth.	0.834
CBR_g11013	CBR_g30924	A0A388KPV4	A0A388LDS8	Guanylate kinase-like domain-containing protein.	Uncharacterized protein.	0.849
CBR_g11013	CBR_g31274	A0A388KPV4	A0A388JXV1	Guanylate kinase-like domain-containing protein.	Uncharacterized protein; Belongs to the adenylate kinase family.	0.846
CBR_g11013	CBR_g32232	A0A388KPV4	A0A388JN32	Guanylate kinase-like domain-containing protein.	Obg-like ATPase 1; Hydrolyzes ATP, and can also hydrolyze GTP with lower efficiency. Has lower affinity for GTP.	0.618
CBR_g11013	CBR_g34141	A0A388KPV4	A0A388LI17	Guanylate kinase-like domain-containing protein.	ADK_lid domain-containing protein; Belongs to the adenylate kinase family.	0.846
CBR_g11013	CBR_g34312	A0A388KPV4	A0A388JYQ0	Guanylate kinase-like domain-containing protein.	Pribosyltran domain-containing protein.	0.932
CBR_g11013	CBR_g36390	A0A388KPV4	A0A388LKM5	Guanylate kinase-like domain-containing protein.	DM10 domain-containing protein.	0.774
CBR_g11013	CBR_g37166	A0A388KPV4	A0A388LMD8	Guanylate kinase-like domain-containing protein.	Uncharacterized protein.	0.681