(18 nodes) rRNA catabolic process network (Chara braunii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CBR_g19347	HRDC domain-containing protein. (1769 aa)
	CBR_g8384	Uncharacterized protein. (793 aa)
	CBR_g4182	Uncharacterized protein. (624 aa)
	CBR_g39322	HRDC domain-containing protein. (1281 aa)
	CBR_g18654	RNB domain-containing protein. (668 aa)
	CBR_g18665	Uncharacterized protein. (285 aa)
	CBR_g8569	Uncharacterized protein. (660 aa)
	CBR_g311	CCHC-type domain-containing protein. (1155 aa)
	CBR_g24366	Protein pelota homolog; May function in recognizing stalled ribosomes and triggering endonucleolytic cleavage of the mRNA, a mechanism to release non- functional ribosomes and degrade damaged mRNAs. (378 aa)
	CBR_g20981	Uncharacterized protein. (385 aa)
	CBR_g16978	RNase_PH domain-containing protein. (365 aa)
	CBR_g61059	KH_dom_type_1 domain-containing protein. (189 aa)
	CBR_g46394	Uncharacterized protein. (437 aa)
	CBR_g41407	RNase_PH domain-containing protein. (470 aa)
	CBR_g31491	RNase_PH domain-containing protein. (136 aa)
	CBR_g31328	KH_dom_type_1 domain-containing protein. (352 aa)
	CBR_g31324	Uncharacterized protein. (372 aa)
	CBR_g26279	Uncharacterized protein. (250 aa)

Your Current Organism:

Chara braunii

NCBI taxonomy Id: 69332
Other names: C. braunii

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CBR_g16978	CBR_g18654	A0A388KU93	A0A388JTM7	RNase_PH domain-containing protein.	RNB domain-containing protein.	0.938
CBR_g16978	CBR_g18665	A0A388KU93	A0A388JTJ1	RNase_PH domain-containing protein.	Uncharacterized protein.	0.938
CBR_g16978	CBR_g19347	A0A388KU93	A0A388KXQ9	RNase_PH domain-containing protein.	HRDC domain-containing protein.	0.984
CBR_g16978	CBR_g20981	A0A388KU93	A0A388L087	RNase_PH domain-containing protein.	Uncharacterized protein.	0.987
CBR_g16978	CBR_g26279	A0A388KU93	A0A388L7H1	RNase_PH domain-containing protein.	Uncharacterized protein.	0.978
CBR_g16978	CBR_g31324	A0A388KU93	A0A388LEM9	RNase_PH domain-containing protein.	Uncharacterized protein.	0.988
CBR_g16978	CBR_g31328	A0A388KU93	A0A388LEP6	RNase_PH domain-containing protein.	KH_dom_type_1 domain-containing protein.	0.989
CBR_g16978	CBR_g31491	A0A388KU93	A0A388LF54	RNase_PH domain-containing protein.	RNase_PH domain-containing protein.	0.998
CBR_g16978	CBR_g39322	A0A388KU93	A0A388K163	RNase_PH domain-containing protein.	HRDC domain-containing protein.	0.984
CBR_g16978	CBR_g41407	A0A388KU93	A0A388LVX5	RNase_PH domain-containing protein.	RNase_PH domain-containing protein.	0.986
CBR_g16978	CBR_g4182	A0A388KU93	A0A388KHK5	RNase_PH domain-containing protein.	Uncharacterized protein.	0.979
CBR_g16978	CBR_g46394	A0A388KU93	A0A388M0L6	RNase_PH domain-containing protein.	Uncharacterized protein.	0.988
CBR_g16978	CBR_g61059	A0A388KU93	A0A388MF82	RNase_PH domain-containing protein.	KH_dom_type_1 domain-containing protein.	0.997
CBR_g16978	CBR_g8384	A0A388KU93	A0A388KLZ6	RNase_PH domain-containing protein.	Uncharacterized protein.	0.947
CBR_g16978	CBR_g8569	A0A388KU93	A0A388JRY1	RNase_PH domain-containing protein.	Uncharacterized protein.	0.997
CBR_g18654	CBR_g16978	A0A388JTM7	A0A388KU93	RNB domain-containing protein.	RNase_PH domain-containing protein.	0.938
CBR_g18654	CBR_g19347	A0A388JTM7	A0A388KXQ9	RNB domain-containing protein.	HRDC domain-containing protein.	0.885
CBR_g18654	CBR_g20981	A0A388JTM7	A0A388L087	RNB domain-containing protein.	Uncharacterized protein.	0.830
CBR_g18654	CBR_g26279	A0A388JTM7	A0A388L7H1	RNB domain-containing protein.	Uncharacterized protein.	0.868
CBR_g18654	CBR_g31324	A0A388JTM7	A0A388LEM9	RNB domain-containing protein.	Uncharacterized protein.	0.818