STRINGSTRING
rnr rnr cspA_1 cspA_1 rhlE_1 rhlE_1 KJL45015.1 KJL45015.1 rph rph pnp pnp deaD_1 deaD_1 rhlE_2 rhlE_2 rnc rnc nnr_3 nnr_3 KJL42541.1 KJL42541.1 hrpB_1 hrpB_1 nudK nudK nuc nuc cspA_3 cspA_3 rapA_2 rapA_2 rnd rnd rng rng
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
rnrRibonuclease R. (502 aa)
cspA_1Putative cold shock protein A. (166 aa)
rhlE_1ATP-dependent RNA helicase RhlE. (568 aa)
KJL45015.1Hypothetical protein. (268 aa)
rphRibonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. (248 aa)
pnpPolyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. (759 aa)
deaD_1ATP-dependent RNA helicase DeaD; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation. (621 aa)
rhlE_2ATP-dependent RNA helicase RhlE. (535 aa)
rncRibonuclease 3; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. (233 aa)
nnr_3Bifunctional NAD(P)H-hydrate repair enzyme Nnr; Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the repair of both epimers of NAD(P)HX; Belongs to the NnrE/AIBP family. (255 aa)
KJL42541.1Hypothetical protein. (143 aa)
hrpB_1ATP-dependent RNA helicase HrpB. (1314 aa)
nudKGDP-mannose pyrophosphatase NudK. (256 aa)
nucThermonuclease precursor. (188 aa)
cspA_3Putative cold shock protein A. (68 aa)
rapA_2RNA polymerase-associated protein RapA. (1095 aa)
rndRibonuclease D. (399 aa)
rngRibonuclease G. (820 aa)
Your Current Organism:
Microbacterium trichothecenolyticum
NCBI taxonomy Id: 69370
Other names: ATCC 51475, Aureibacterium trichothecenolyticum, Aureobacterium trichothecenolyticum, CIP 103817, DSM 8608, IFO 15077, LMG 16696, LMG:16696, M. trichothecenolyticum, Microbacterium sp. BDR3P1B1, NBRC 15077
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