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| | KJL40162.1 | Hypothetical protein. (494 aa) |
| | KJL39919.1 | Phage Terminase. (585 aa) |
| | KJL39893.1 | Helix-turn-helix domain of resolvase. (247 aa) |
| | xerC_2 | Tyrosine recombinase XerC. (480 aa) |
| | orn | Oligoribonuclease; 3'-to-5' exoribonuclease specific for small oligoribonucleotides; Belongs to the oligoribonuclease family. (208 aa) |
| | ssb_4 | Single-stranded DNA-binding protein. (181 aa) |
| | nei1_2 | Endonuclease 8 1; Belongs to the FPG family. (352 aa) |
| | valS | Valine--tRNA ligase; Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a 'posttransfer' editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA- dependent manner. (866 aa) |
| | ileS | Isoleucine--tRNA ligase; Catalyzes the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile). Belongs to the class-I aminoacyl-tRNA synthetase family. IleS type 2 subfamily. (1127 aa) |
| | rng | Ribonuclease G. (820 aa) |
| | leuS | Leucine--tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family. (866 aa) |
| | comEA | ComE operon protein 1. (180 aa) |
| | KJL39814.1 | Hypothetical protein. (345 aa) |
| | dnaJ | Chaperone protein DnaJ; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, D [...] (370 aa) |
| | rsmE | Ribosomal RNA small subunit methyltransferase E; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit. (245 aa) |
| | ybeY | Endoribonuclease YbeY; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. (156 aa) |
| | recO | DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination. (223 aa) |
| | dus | Putative tRNA-dihydrouridine synthase; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family. (391 aa) |
| | dnaG | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. (621 aa) |
| | polA_2 | DNA polymerase I, thermostable. (576 aa) |
| | hrdB | RNA polymerase principal sigma factor HrdB; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. (446 aa) |
| | gyrB_2 | DNA gyrase subunit B. (682 aa) |
| | gyrA_2 | DNA gyrase subunit A. (819 aa) |
| | rnd | Ribonuclease D. (399 aa) |
| | KJL39725.1 | PemK-like protein. (173 aa) |
| | KJL39724.1 | Hypothetical protein. (70 aa) |
| | thrS | Threonine--tRNA ligase; Belongs to the class-II aminoacyl-tRNA synthetase family. (664 aa) |
| | KJL39716.1 | Hypothetical protein. (173 aa) |
| | ruvC_2 | Crossover junction endodeoxyribonuclease RuvC; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group. (181 aa) |
| | ruvA | Holliday junction ATP-dependent DNA helicase RuvA; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB. (208 aa) |
| | ruvB | Holliday junction ATP-dependent DNA helicase RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. (341 aa) |
| | rarA | Replication-associated recombination protein A. (448 aa) |
| | alaS_2 | Alanine--tRNA ligase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. (885 aa) |
| | yrrK | Putative Holliday junction resolvase; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. (155 aa) |
| | nusB | Hypothetical protein; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons. (136 aa) |
| | rpoZ | DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. (84 aa) |
| | priA_2 | Primosomal protein N; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily. (673 aa) |
| | fmt | Methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family. (307 aa) |
| | rsmB | Ribosomal RNA small subunit methyltransferase B; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. (456 aa) |
| | polA_1 | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. (885 aa) |
| | psuG | Pseudouridine-5'-phosphate glycosidase. (306 aa) |
| | KJL39629.1 | Hypothetical protein. (454 aa) |
| | hrpB_2 | ATP-dependent RNA helicase HrpB. (832 aa) |
| | trmI | tRNA (adenine(58)-N(1))-methyltransferase TrmI. (342 aa) |
| | KJL39600.1 | Putative TrmH family tRNA/rRNA methyltransferase; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. (267 aa) |
| | polC_2 | DNA polymerase III PolC-type. (253 aa) |
| | KJL40381.1 | Hypothetical protein. (423 aa) |
| | nucS | Endonuclease NucS; Cleaves both 3' and 5' ssDNA extremities of branched DNA structures; Belongs to the NucS endonuclease family. (231 aa) |
| | proS_2 | Proline--tRNA ligase. (165 aa) |
| | gyrA_1 | DNA gyrase subunit A; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. (881 aa) |
| | gyrB_1 | DNA gyrase subunit B; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. (680 aa) |
| | recF | DNA replication and repair protein RecF; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP; Belongs to the RecF family. (402 aa) |
| | dnaN | DNA polymerase III subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] (384 aa) |
| | dnaA_2 | Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family. (483 aa) |
| | rnpA | Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. (111 aa) |
| | rsmG | Ribosomal RNA small subunit methyltransferase G; Specifically methylates the N7 position of a guanine in 16S rRNA; Belongs to the methyltransferase superfamily. RNA methyltransferase RsmG family. (207 aa) |
| | sigI_2 | Putative ECF RNA polymerase sigma factor SigI; Belongs to the sigma-70 factor family. ECF subfamily. (421 aa) |
| | cca | CCA-adding enzyme; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family. (475 aa) |
| | ssb_3 | Single-stranded DNA-binding protein. (175 aa) |
| | dnaB | Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily. (467 aa) |
| | KJL40242.1 | Hypothetical protein. (158 aa) |
| | KJL40224.1 | Endonuclease/Exonuclease/phosphatase family protein. (872 aa) |
| | KJL40207.1 | Putative 3-methyladenine DNA glycosylase; Belongs to the DNA glycosylase MPG family. (225 aa) |
| | KJL40205.1 | Hypothetical protein. (444 aa) |
| | recD2_3 | ATP-dependent RecD-like DNA helicase. (454 aa) |
| | KJL40854.1 | Hypothetical protein. (395 aa) |
| | tsaD | tRNA N6-adenosine threonylcarbamoyltransferase; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family. (355 aa) |
| | mshD_6 | Mycothiol acetyltransferase. (167 aa) |
| | tsaB | tRNA threonylcarbamoyladenosine biosynthesis protein TsaB. (219 aa) |
| | KJL40809.1 | HNH endonuclease. (465 aa) |
| | truA | tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs. (286 aa) |
| | rpoA | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (329 aa) |
| | rpoC | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1290 aa) |
| | rpoB | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1166 aa) |
| | nei1_1 | Endonuclease 8 1. (268 aa) |
| | fitB | Toxin FitB; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family. (137 aa) |
| | nuc | Thermonuclease precursor. (188 aa) |
| | KJL40680.1 | RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily. (170 aa) |
| | recQ_2 | ATP-dependent DNA helicase RecQ. (713 aa) |
| | KJL40592.1 | Hypothetical protein. (461 aa) |
| | KJL41211.1 | Putative RNA methyltransferase/cg2084; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. (445 aa) |
| | exoA | Exodeoxyribonuclease. (298 aa) |
| | trpS | Tryptophan--tRNA ligase; Catalyzes the attachment of tryptophan to tRNA(Trp). Belongs to the class-I aminoacyl-tRNA synthetase family. (326 aa) |
| | fpg2_2 | Putative formamidopyrimidine-DNA glycosylase-like protein; Belongs to the FPG family. (286 aa) |
| | KJL41146.1 | Hypothetical protein. (360 aa) |
| | KJL41112.1 | RNA polymerase sigma factor; Belongs to the sigma-70 factor family. (357 aa) |
| | KJL41102.1 | RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily. (629 aa) |
| | ada | Bifunctional transcriptional activator/DNA repair enzyme Ada. (169 aa) |
| | alkA | DNA-3-methyladenine glycosylase 2. (526 aa) |
| | KJL41040.1 | Putative DNA ligase-like protein. (348 aa) |
| | ykoU | Putative ATP-dependent DNA ligase YkoU. (347 aa) |
| | KJL41009.1 | Hypothetical protein. (233 aa) |
| | KJL41629.1 | Hypothetical protein. (58 aa) |
| | nusG | Hypothetical protein; Participates in transcription elongation, termination and antitermination. (373 aa) |
| | KJL41492.1 | Rhodanese superfamily protein. (247 aa) |
| | vapC3 | Ribonuclease VapC3. (140 aa) |
| | KJL41450.1 | Hypothetical protein. (362 aa) |
| | KJL41441.1 | Hypothetical protein. (163 aa) |
| | sigG | ECF RNA polymerase sigma factor SigG. (312 aa) |
| | dinB_4 | DNA polymerase IV; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII. (398 aa) |
| | dnaX_2 | DNA polymerase III subunit tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. (752 aa) |
| | recR | Recombination protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO. (197 aa) |
| | KJL41988.1 | Hypothetical protein. (160 aa) |
| | nrdE2 | Ribonucleoside-diphosphate reductase subunit alpha 2; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides. (716 aa) |
| | nrdF2 | Ribonucleoside-diphosphate reductase subunit beta nrdF2; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides; Belongs to the ribonucleoside diphosphate reductase small chain family. (324 aa) |
| | rlmG | Ribosomal RNA large subunit methyltransferase G; Specifically methylates the guanine in position 1835 (m2G1835) of 23S rRNA. (395 aa) |
| | lig | Putative DNA ligase-like protein; DNA ligase that seals nicks in double-stranded DNA during DNA replication, DNA recombination and DNA repair. (510 aa) |
| | KJL41918.1 | NYN domain protein. (291 aa) |
| | hrpB_1 | ATP-dependent RNA helicase HrpB. (1314 aa) |
| | rsmI | Ribosomal RNA small subunit methyltransferase I; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA. (272 aa) |
| | metG | Methionine--tRNA ligase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation. (526 aa) |
| | ycfH | Putative deoxyribonuclease YcfH. (303 aa) |
| | rsmA | Ribosomal RNA small subunit methyltransferase A; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. (286 aa) |
| | mfd | Transcription-repair-coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily. (1208 aa) |
| | hisS | Histidine--tRNA ligase; Belongs to the class-II aminoacyl-tRNA synthetase family. (409 aa) |
| | KJL42283.1 | Transposase, Mutator family. (403 aa) |
| | xerC_1 | Tyrosine recombinase XerC. (413 aa) |
| | KJL42276.1 | Hypothetical protein. (149 aa) |
| | KJL42239.1 | Hypothetical protein. (193 aa) |
| | guaD | Guanine deaminase. (163 aa) |
| | KJL42181.1 | RNA polymerase sigma factor. (621 aa) |
| | xthA | Exodeoxyribonuclease III. (279 aa) |
| | sigJ_3 | ECF RNA polymerase sigma factor SigJ; Belongs to the sigma-70 factor family. (295 aa) |
| | trmH | tRNA (guanosine(18)-2'-O)-methyltransferase. (218 aa) |
| | KJL42598.1 | Hypothetical protein. (576 aa) |
| | recN | DNA repair protein RecN; May be involved in recombinational repair of damaged DNA. (563 aa) |
| | nudF | ADP-ribose pyrophosphatase. (194 aa) |
| | xerD_2 | Tyrosine recombinase XerD; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. (316 aa) |
| | rluB | Ribosomal large subunit pseudouridine synthase B; Belongs to the pseudouridine synthase RsuA family. (257 aa) |
| | mug | G/U mismatch-specific DNA glycosylase. (189 aa) |
| | KJL42536.1 | Hypothetical protein. (462 aa) |
| | rsmH | Ribosomal RNA small subunit methyltransferase H; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA. (322 aa) |
| | rluD | Ribosomal large subunit pseudouridine synthase D; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family. (306 aa) |
| | dnaE | DNA polymerase III subunit alpha. (1172 aa) |
| | ypcP | 5'-3' exonuclease. (307 aa) |
| | uvrB | UvrABC system protein B; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate and [...] (687 aa) |
| | uvrA_2 | UvrABC system protein A; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate. (983 aa) |
| | uvrC | UvrABC system protein C; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. (643 aa) |
| | KJL42967.1 | PaaX-like protein C-terminal domain. (286 aa) |
| | glyQS | Glycine--tRNA ligase; Catalyzes the attachment of glycine to tRNA(Gly). Belongs to the class-II aminoacyl-tRNA synthetase family. (461 aa) |
| | KJL42860.1 | HhH-GPD superfamily base excision DNA repair protein. (194 aa) |
| | rlmN | Putative dual-specificity RNA methyltransferase RlmN; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs; Belongs to the radical SAM superfamily. RlmN family. (413 aa) |
| | rnhA | Ribonuclease H; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. (176 aa) |
| | ogt | Methylated-DNA--protein-cysteine methyltransferase. (197 aa) |
| | lsr2_2 | Nucleoid-associated protein Lsr2. (117 aa) |
| | dnaE2 | Error-prone DNA polymerase; DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase. (1159 aa) |
| | dinB_3 | DNA polymerase IV. (568 aa) |
| | KJL43193.1 | Hypothetical protein. (282 aa) |
| | cas9 | CRISPR-associated endonuclease Cas9. (165 aa) |
| | KJL43143.1 | Hypothetical protein. (436 aa) |
| | KJL43141.1 | Putative TrmH family tRNA/rRNA methyltransferase; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. (330 aa) |
| | cysS | Cysteine--tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family. (487 aa) |
| | carD | RNA polymerase-binding transcription factor CarD. (160 aa) |
| | KJL43127.1 | Hypothetical protein; May play a role in the intracellular transport of hydrophobic ligands. (200 aa) |
| | ndx1 | Diadenosine hexaphosphate hydrolase. (312 aa) |
| | sigK_2 | ECF RNA polymerase sigma factor SigK; Belongs to the sigma-70 factor family. ECF subfamily. (200 aa) |
| | dnaX_1 | DNA polymerase III subunit tau. (394 aa) |
| | topA | DNA topoisomerase 1; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] (915 aa) |
| | tdk_2 | Thymidine kinase. (248 aa) |
| | KJL43497.1 | Hypothetical protein. (233 aa) |
| | KJL43447.1 | Hypothetical protein. (1087 aa) |
| | gltX | Glutamate--tRNA ligase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu); Belongs to the class-I aminoacyl-tRNA synthetase family. Glutamate--tRNA ligase type 1 subfamily. (509 aa) |
| | sigE | ECF RNA polymerase sigma factor SigE; Belongs to the sigma-70 factor family. ECF subfamily. (185 aa) |
| | rsmD | Ribosomal RNA small subunit methyltransferase D. (187 aa) |
| | rnc | Ribonuclease 3; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. (233 aa) |
| | fpg1 | Formamidopyrimidine-DNA glycosylase 1; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates. (315 aa) |
| | smc_2 | Chromosome partition protein Smc; Required for chromosome condensation and partitioning. Belongs to the SMC family. (1202 aa) |
| | rimM | Ribosome maturation factor RimM; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes; Belongs to the RimM family. (216 aa) |
| | trmD | tRNA (guanine-N(1)-)-methyltransferase; Specifically methylates guanosine-37 in various tRNAs. Belongs to the RNA methyltransferase TrmD family. (231 aa) |
| | rnhB | Ribonuclease HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family. (219 aa) |
| | KJL43373.1 | Hypothetical protein; Belongs to the UPF0102 family. (139 aa) |
| | xerD_1 | Tyrosine recombinase XerD; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. (301 aa) |
| | KJL43361.1 | Hypothetical protein. (94 aa) |
| | mnmA | tRNA-specific 2-thiouridylase MnmA; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34. (359 aa) |
| | ligA | DNA ligase; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA. (790 aa) |
| | serS | Serine--tRNA ligase; Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L- seryl-tRNA(Sec), which will be further converted into selenocysteinyl- tRNA(Sec). (417 aa) |
| | dinB_2 | DNA polymerase IV. (363 aa) |
| | KJL43621.1 | Hypothetical protein. (199 aa) |
| | KJL43614.1 | Hypothetical protein. (328 aa) |
| | tdk_1 | Thymidine kinase. (179 aa) |
| | KJL43585.1 | HNH endonuclease. (122 aa) |
| | sigJ_2 | ECF RNA polymerase sigma factor SigJ; Belongs to the sigma-70 factor family. (293 aa) |
| | KJL43563.1 | Hypothetical protein. (125 aa) |
| | KJL43562.1 | Hypothetical protein. (274 aa) |
| | recQ_1 | ATP-dependent DNA helicase RecQ. (679 aa) |
| | tag | DNA-3-methyladenine glycosylase 1. (191 aa) |
| | uvrA_1 | UvrABC system protein A. (792 aa) |
| | rhlE_2 | ATP-dependent RNA helicase RhlE. (535 aa) |
| | KJL43789.1 | Hypothetical protein. (158 aa) |
| | KJL44185.1 | Hypothetical protein. (150 aa) |
| | ywlC | Threonylcarbamoyl-AMP synthase; Belongs to the SUA5 family. (253 aa) |
| | rho | Hypothetical protein; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template. (754 aa) |
| | argS | Arginine--tRNA ligase. (555 aa) |
| | KJL44155.1 | Hypothetical protein. (153 aa) |
| | KJL44129.1 | Metallo-beta-lactamase superfamily protein. (623 aa) |
| | trmB | tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. (230 aa) |
| | KJL44121.1 | Hypothetical protein. (280 aa) |
| | ung | Uracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine. (230 aa) |
| | alaS_1 | Alanine--tRNA ligase. (289 aa) |
| | sigR | ECF RNA polymerase sigma factor SigR; Belongs to the sigma-70 factor family. ECF subfamily. (240 aa) |
| | deaD_1 | ATP-dependent RNA helicase DeaD; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation. (621 aa) |
| | KJL44327.1 | DNA/RNA non-specific endonuclease. (292 aa) |
| | pnp | Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. (759 aa) |
| | rnj | Putative ribonuclease J; An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay. (558 aa) |
| | recA | Protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. (349 aa) |
| | miaB | (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB; Catalyzes the methylthiolation of N6-(dimethylallyl)adenosine (i(6)A), leading to the formation of 2-methylthio-N6- (dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine. (521 aa) |
| | miaA | tRNA dimethylallyltransferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family. (314 aa) |
| | lexA | LexA repressor; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair. (226 aa) |
| | aviRb | 23S rRNA (uridine(2479)-2'-O)-methyltransferase; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. (299 aa) |
| | pheS | Phenylalanine--tRNA ligase alpha subunit; Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily. (349 aa) |
| | pheT | Phenylalanine--tRNA ligase beta subunit; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily. (844 aa) |
| | tyrS | Tyrosine--tRNA ligase; Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two- step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr); Belongs to the class-I aminoacyl-tRNA synthetase family. TyrS type 1 subfamily. (462 aa) |
| | KJL44469.1 | Hypothetical protein. (495 aa) |
| | KJL44460.1 | Hypothetical protein. (155 aa) |
| | KJL44458.1 | F5/8 type C domain protein. (1162 aa) |
| | KJL44417.1 | Putative DNA ligase-like protein. (415 aa) |
| | rsrIM | Modification methylase RsrI; Belongs to the N(4)/N(6)-methyltransferase family. (352 aa) |
| | KJL44746.1 | RNA polymerase sigma factor SigJ. (93 aa) |
| | sigJ_1 | ECF RNA polymerase sigma factor SigJ; Belongs to the sigma-70 factor family. (301 aa) |
| | ykoV | Putative DNA repair protein YkoV; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family. (300 aa) |
| | KJL44706.1 | Putative DNA ligase-like protein. (875 aa) |
| | rph | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. (248 aa) |
| | uvrD_2 | DNA helicase II; Belongs to the helicase family. UvrD subfamily. (1115 aa) |
| | uvrD_1 | DNA helicase II. (1054 aa) |
| | cshA | DEAD-box ATP-dependent RNA helicase CshA; Belongs to the DEAD box helicase family. (511 aa) |
| | KJL44662.1 | PHP domain protein. (287 aa) |
| | fpg2_1 | Putative formamidopyrimidine-DNA glycosylase-like protein; Belongs to the FPG family. (278 aa) |
| | polC_1 | DNA polymerase III PolC-type. (200 aa) |
| | rmuC | DNA recombination protein RmuC. (447 aa) |
| | sigL | ECF RNA polymerase sigma factor SigL; Belongs to the sigma-70 factor family. ECF subfamily. (179 aa) |
| | xseA | Exodeoxyribonuclease 7 large subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseA family. (432 aa) |
| | xseB | Exodeoxyribonuclease 7 small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family. (80 aa) |
| | KJL44825.1 | Hypothetical protein. (446 aa) |
| | KJL44824.1 | Hypothetical protein. (364 aa) |
| | KJL45015.1 | Hypothetical protein. (268 aa) |
| | KJL45007.1 | Metallo-beta-lactamase superfamily protein. (622 aa) |
| | KJL45006.1 | Transposase IS116/IS110/IS902 family protein. (394 aa) |
| | hin | DNA-invertase hin. (193 aa) |
| | int-Tn | Transposase from transposon Tn916. (376 aa) |
| | KJL44961.1 | Hypothetical protein. (164 aa) |
| | KJL45103.1 | Radical SAM superfamily protein. (366 aa) |
| | rhlE_1 | ATP-dependent RNA helicase RhlE. (568 aa) |
| | sigI_1 | Putative ECF RNA polymerase sigma factor SigI; Belongs to the sigma-70 factor family. (382 aa) |
| | sbcD | Nuclease SbcCD subunit D; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family. (382 aa) |
| | tadA | tRNA-specific adenosine deaminase. (172 aa) |
| | KJL45172.1 | Hypothetical protein. (60 aa) |
| | asnS | Asparagine--tRNA ligase; Catalyzes the attachment of L-aspartate to tRNA(Asp) in a two-step reaction: L-aspartate is first activated by ATP to form Asp- AMP and then transferred to the acceptor end of tRNA(Asp). Belongs to the class-II aminoacyl-tRNA synthetase family. Type 2 subfamily. (456 aa) |
| | radA | Hypothetical protein; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function. (456 aa) |
| | lysX | Lysylphosphatidylglycerol biosynthesis bifunctional protein LysX; Belongs to the class-II aminoacyl-tRNA synthetase family. (504 aa) |
| | tilS | tRNA(Ile)-lysidine synthase; Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine. Belongs to the tRNA(Ile)-lysidine synthase family. (331 aa) |
| | KJL45263.1 | Putative prophage phiRv2 integrase; Belongs to the 'phage' integrase family. (380 aa) |
| | KJL45372.1 | Sigma-70, region 4; Belongs to the sigma-70 factor family. (417 aa) |
| | rnr | Ribonuclease R. (502 aa) |
| | proS_1 | Proline--tRNA ligase; Catalyzes the attachment of proline to tRNA(Pro) in a two- step reaction: proline is first activated by ATP to form Pro-AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and involves deacy [...] (599 aa) |
| | nusA | Hypothetical protein; Participates in both transcription termination and antitermination. (329 aa) |
| | rbfA | Ribosome-binding factor A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA. (144 aa) |
| | mutY | A/G-specific adenine glycosylase. (288 aa) |
| | truB | tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily. (295 aa) |
| | KJL45441.1 | Eukaryotic DNA topoisomerase I, catalytic core. (325 aa) |
| | KJL45539.1 | RNA polymerase sigma factor. (414 aa) |
| | recE | Exodeoxyribonuclease 8. (314 aa) |
| | KJL45604.1 | Hypothetical protein. (130 aa) |
| | KJL45597.1 | Hypothetical protein. (252 aa) |
| | hindIIIM | Modification methylase HindIII. (455 aa) |
| | hpaIIM | Modification methylase HpaII. (245 aa) |
| | KJL45586.1 | Hypothetical protein. (273 aa) |
| | KJL45569.1 | Hypothetical protein. (104 aa) |
| | lsr2_1 | Nucleoid-associated protein Lsr2. (65 aa) |
| | sigK_1 | ECF RNA polymerase sigma factor SigK; Belongs to the sigma-70 factor family. ECF subfamily. (183 aa) |
| | ssb_2 | Single-stranded DNA-binding protein. (148 aa) |
| | recD2_2 | ATP-dependent RecD-like DNA helicase. (1048 aa) |
| | ssb_1 | Single-stranded DNA-binding protein. (148 aa) |
| | recD2_1 | ATP-dependent RecD-like DNA helicase. (1004 aa) |
| | KJL45738.1 | Hypothetical protein. (103 aa) |
| | KJL45767.1 | Hypothetical protein; MT-A70. (295 aa) |
| | KJL45765.1 | 5-methylcytosine-specific restriction enzyme subunit McrC. (455 aa) |
| | KJL45799.1 | Putative prophage phiRv2 integrase; Belongs to the 'phage' integrase family. (230 aa) |
| | dinB_1 | DNA polymerase IV; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII. (420 aa) |
| | KJL45879.1 | Integrase core domain protein. (369 aa) |
| | dnaA_1 | Chromosomal replication initiator protein DnaA. (266 aa) |
| | KJL45889.1 | Integrase core domain protein. (396 aa) |
| | KJL45897.1 | Integrase core domain protein. (310 aa) |
