(25 nodes) Mixed, incl. Regulation of transcriptional start site selection at RNA polymerase II promoter, and U2AF complex network (Ixodes scapularis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	B7P185_IXOSC	Uncharacterized protein. (66 aa)
	B7P318_IXOSC	E1b-55kD-associated protein, putative (Fragment). (368 aa)
	B7P3N6_IXOSC	Transformation upregulated nuclear protein, putative. (316 aa)
	B7P4D0_IXOSC	IFN-response element binding factor, putative. (194 aa)
	B7P4K4_IXOSC	Poly(Rc) binding protein, putative. (398 aa)
	B7P6Y8_IXOSC	E1b-55kD-associated protein, putative. (233 aa)
	B7PBN4_IXOSC	Alternative splicing factor ASF/SF2, putative. (339 aa)
	B7PCK4_IXOSC	Splicing factor u2af large subunit, putative. (444 aa)
	B7PEK1_IXOSC	Polypyrimidine tract binding protein, putative (Fragment). (512 aa)
	B7PJS9_IXOSC	Splicing factor hnRNP-F, putative. (293 aa)
	B7PPR4_IXOSC	RSZp22 protein, putative. (199 aa)
	B7PR72_IXOSC	Splicing factor, arginine/serine-rich, putative (Fragment). (363 aa)
	B7PRH7_IXOSC	U2 snRNP splicing factor, small subunit, putative. (256 aa)
	B7PRT8_IXOSC	U2 snrnp auxiliary factor, small subunit, putative. (409 aa)
	B7PU86_IXOSC	G-3-P dehydrogenase, putative. (411 aa)
	B7PWM5_IXOSC	Alternative splicing factor SRp20/9G8, putative. (241 aa)
	B7PYH0_IXOSC	Alternative splicing factor SRp55/B52/SRp75, putative. (364 aa)
	B7PYH1_IXOSC	Alternative splicing factor SRp55/B52/SRp75, putative. (268 aa)
	B7Q1Y0_IXOSC	Heterogeneous nuclear ribonucleoprotein L, putative. (97 aa)
	B7Q3Q4_IXOSC	Transformer-2 protein C, putative (Fragment). (258 aa)
	B7Q3Z9_IXOSC	RSZp21 protein, putative. (222 aa)
	B7Q6Y7_IXOSC	RNA-binding protein musashi, putative. (275 aa)
	B7QFB3_IXOSC	Tar DNA-binding protein, putative. (204 aa)
	B7QKF8_IXOSC	Alternative splicing factor ASF/SF2, putative. (223 aa)
	B7QNF4_IXOSC	RNA binding protein, putative. (347 aa)

Your Current Organism:

Ixodes scapularis

NCBI taxonomy Id: 6945
Other names: I. scapularis, Ixodes dammini, Ixodes sp. DNAS-303-249710, black-legged tick, blacklegged tick, deer tick, shoulder tick

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B7P185_IXOSC	B7P318_IXOSC	B7P185	B7P318	Uncharacterized protein.	E1b-55kD-associated protein, putative (Fragment).	0.581
B7P185_IXOSC	B7P3N6_IXOSC	B7P185	B7P3N6	Uncharacterized protein.	Transformation upregulated nuclear protein, putative.	0.643
B7P185_IXOSC	B7P4D0_IXOSC	B7P185	B7P4D0	Uncharacterized protein.	IFN-response element binding factor, putative.	0.636
B7P185_IXOSC	B7P4K4_IXOSC	B7P185	B7P4K4	Uncharacterized protein.	Poly(Rc) binding protein, putative.	0.662
B7P185_IXOSC	B7P6Y8_IXOSC	B7P185	B7P6Y8	Uncharacterized protein.	E1b-55kD-associated protein, putative.	0.581
B7P185_IXOSC	B7PBN4_IXOSC	B7P185	B7PBN4	Uncharacterized protein.	Alternative splicing factor ASF/SF2, putative.	0.413
B7P185_IXOSC	B7PEK1_IXOSC	B7P185	B7PEK1	Uncharacterized protein.	Polypyrimidine tract binding protein, putative (Fragment).	0.802
B7P185_IXOSC	B7PJS9_IXOSC	B7P185	B7PJS9	Uncharacterized protein.	Splicing factor hnRNP-F, putative.	0.602
B7P185_IXOSC	B7PPR4_IXOSC	B7P185	B7PPR4	Uncharacterized protein.	RSZp22 protein, putative.	0.484
B7P185_IXOSC	B7PR72_IXOSC	B7P185	B7PR72	Uncharacterized protein.	Splicing factor, arginine/serine-rich, putative (Fragment).	0.472
B7P185_IXOSC	B7PU86_IXOSC	B7P185	B7PU86	Uncharacterized protein.	G-3-P dehydrogenase, putative.	0.564
B7P185_IXOSC	B7PWM5_IXOSC	B7P185	B7PWM5	Uncharacterized protein.	Alternative splicing factor SRp20/9G8, putative.	0.484
B7P185_IXOSC	B7PYH0_IXOSC	B7P185	B7PYH0	Uncharacterized protein.	Alternative splicing factor SRp55/B52/SRp75, putative.	0.413
B7P185_IXOSC	B7PYH1_IXOSC	B7P185	B7PYH1	Uncharacterized protein.	Alternative splicing factor SRp55/B52/SRp75, putative.	0.413
B7P185_IXOSC	B7Q3Q4_IXOSC	B7P185	B7Q3Q4	Uncharacterized protein.	Transformer-2 protein C, putative (Fragment).	0.608
B7P185_IXOSC	B7Q3Z9_IXOSC	B7P185	B7Q3Z9	Uncharacterized protein.	RSZp21 protein, putative.	0.484
B7P185_IXOSC	B7Q6Y7_IXOSC	B7P185	B7Q6Y7	Uncharacterized protein.	RNA-binding protein musashi, putative.	0.521
B7P185_IXOSC	B7QFB3_IXOSC	B7P185	B7QFB3	Uncharacterized protein.	Tar DNA-binding protein, putative.	0.441
B7P185_IXOSC	B7QKF8_IXOSC	B7P185	B7QKF8	Uncharacterized protein.	Alternative splicing factor ASF/SF2, putative.	0.574
B7P185_IXOSC	B7QNF4_IXOSC	B7P185	B7QNF4	Uncharacterized protein.	RNA binding protein, putative.	0.652