(12 nodes) Mixed, incl. Poly-purine tract binding, and mRNA splice site selection network (Ixodes scapularis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	B7P106_IXOSC	Zinc finger protein 296, putative. (95 aa)
	B7P107_IXOSC	RRM domain-containing protein. (111 aa)
	B7P524_IXOSC	Uncharacterized protein. (559 aa)
	B7P9D6_IXOSC	Protein spitz, putative (Fragment). (165 aa)
	B7PP28_IXOSC	RRM domain-containing protein. (60 aa)
	B7PPW6_IXOSC	NY-REN-37 antigen, putative. (171 aa)
	B7PR05_IXOSC	RRM domain-containing protein. (170 aa)
	B7PVI7_IXOSC	RNA-binding protein musashi, putative. (353 aa)
	B7Q1J6_IXOSC	RNA binding protein NAPOR-3, putative. (139 aa)
	B7QB59_IXOSC	Uncharacterized protein. (92 aa)
	B7QB60_IXOSC	Uncharacterized protein. (111 aa)
	B7QIG1_IXOSC	Splicing factor, putative (Fragment). (148 aa)

Your Current Organism:

Ixodes scapularis

NCBI taxonomy Id: 6945
Other names: I. scapularis, Ixodes dammini, Ixodes sp. DNAS-303-249710, black-legged tick, blacklegged tick, deer tick, shoulder tick

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B7P106_IXOSC	B7PP28_IXOSC	B7P106	B7PP28	Zinc finger protein 296, putative.	RRM domain-containing protein.	0.405
B7P106_IXOSC	B7Q1J6_IXOSC	B7P106	B7Q1J6	Zinc finger protein 296, putative.	RNA binding protein NAPOR-3, putative.	0.405
B7P107_IXOSC	B7PP28_IXOSC	B7P107	B7PP28	RRM domain-containing protein.	RRM domain-containing protein.	0.405
B7P107_IXOSC	B7Q1J6_IXOSC	B7P107	B7Q1J6	RRM domain-containing protein.	RNA binding protein NAPOR-3, putative.	0.405
B7P524_IXOSC	B7PVI7_IXOSC	B7P524	B7PVI7	Uncharacterized protein.	RNA-binding protein musashi, putative.	0.593
B7P524_IXOSC	B7QB59_IXOSC	B7P524	B7QB59	Uncharacterized protein.	Uncharacterized protein.	0.706
B7P524_IXOSC	B7QB60_IXOSC	B7P524	B7QB60	Uncharacterized protein.	Uncharacterized protein.	0.593
B7P524_IXOSC	B7QIG1_IXOSC	B7P524	B7QIG1	Uncharacterized protein.	Splicing factor, putative (Fragment).	0.706
B7P9D6_IXOSC	B7PVI7_IXOSC	B7P9D6	B7PVI7	Protein spitz, putative (Fragment).	RNA-binding protein musashi, putative.	0.660
B7PP28_IXOSC	B7P106_IXOSC	B7PP28	B7P106	RRM domain-containing protein.	Zinc finger protein 296, putative.	0.405
B7PP28_IXOSC	B7P107_IXOSC	B7PP28	B7P107	RRM domain-containing protein.	RRM domain-containing protein.	0.405
B7PPW6_IXOSC	B7PVI7_IXOSC	B7PPW6	B7PVI7	NY-REN-37 antigen, putative.	RNA-binding protein musashi, putative.	0.593
B7PPW6_IXOSC	B7QB59_IXOSC	B7PPW6	B7QB59	NY-REN-37 antigen, putative.	Uncharacterized protein.	0.706
B7PPW6_IXOSC	B7QB60_IXOSC	B7PPW6	B7QB60	NY-REN-37 antigen, putative.	Uncharacterized protein.	0.593
B7PPW6_IXOSC	B7QIG1_IXOSC	B7PPW6	B7QIG1	NY-REN-37 antigen, putative.	Splicing factor, putative (Fragment).	0.706
B7PR05_IXOSC	B7Q1J6_IXOSC	B7PR05	B7Q1J6	RRM domain-containing protein.	RNA binding protein NAPOR-3, putative.	0.900
B7PVI7_IXOSC	B7P524_IXOSC	B7PVI7	B7P524	RNA-binding protein musashi, putative.	Uncharacterized protein.	0.593
B7PVI7_IXOSC	B7P9D6_IXOSC	B7PVI7	B7P9D6	RNA-binding protein musashi, putative.	Protein spitz, putative (Fragment).	0.660
B7PVI7_IXOSC	B7PPW6_IXOSC	B7PVI7	B7PPW6	RNA-binding protein musashi, putative.	NY-REN-37 antigen, putative.	0.593
B7PVI7_IXOSC	B7Q1J6_IXOSC	B7PVI7	B7Q1J6	RNA-binding protein musashi, putative.	RNA binding protein NAPOR-3, putative.	0.600