(22 nodes) Postsynaptic density network (Ixodes scapularis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	B7P1C8_IXOSC	Protein hu-li tai shao, putative. (631 aa)
	B7P1I5_IXOSC	Uncharacterized protein. (1521 aa)
	B7P7Q2_IXOSC	Receptor targeting protein Lin-7, putative. (204 aa)
	B7P9A9_IXOSC	HyFMR1 protein, putative (Fragment). (506 aa)
	B7PAS0_IXOSC	Glutamate receptor interacting protein, putative. (1009 aa)
	B7PBJ3_IXOSC	Uncharacterized protein. (407 aa)
	B7PGR9_IXOSC	Uncharacterized protein. (543 aa)
	B7PHS1_IXOSC	PDZ/DHR/GLGF domaincontaining protein. (249 aa)
	B7PP82_IXOSC	Secreted protein, putative (Fragment). (234 aa)
	B7PP85_IXOSC	Secreted protein, putative. (285 aa)
	B7PQH2_IXOSC	NMDA-type glutamate receptor subunit 1, variant, putative. (138 aa)
	B7PSQ9_IXOSC	Secreted protein, putative (Fragment). (252 aa)
	B7PV81_IXOSC	Leucine rich domain-containing protein, putative (Fragment). (1327 aa)
	B7PXZ2_IXOSC	SAM domaincontaining protein. (782 aa)
	B7Q593_IXOSC	Serine/threonine-protein kinase receptor; Belongs to the protein kinase superfamily. TKL Ser/Thr protein kinase family. TGFB receptor subfamily. (452 aa)
	B7Q772_IXOSC	Discs large protein, putative. (437 aa)
	B7Q7G5_IXOSC	Protein kinase C alpha binding protein, putative. (189 aa)
	B7Q9E7_IXOSC	Eukaryotic elongation factor 2 kinase. (661 aa)
	B7Q9Z1_IXOSC	Glutamate receptor, putative (Fragment); Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family. (598 aa)
	B7QGB7_IXOSC	Mucoepidermoid carcinoma translocated, putative. (236 aa)
	B7QGB8_IXOSC	TORC_C domain-containing protein. (341 aa)
	B7QKI9_IXOSC	Discs large protein, putative. (119 aa)

Your Current Organism:

Ixodes scapularis

NCBI taxonomy Id: 6945
Other names: I. scapularis, Ixodes dammini, Ixodes sp. DNAS-303-249710, black-legged tick, blacklegged tick, deer tick, shoulder tick

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B7P7Q2_IXOSC	B7Q772_IXOSC	B7P7Q2	B7Q772	Receptor targeting protein Lin-7, putative.	Discs large protein, putative.	0.499
B7P7Q2_IXOSC	B7QKI9_IXOSC	B7P7Q2	B7QKI9	Receptor targeting protein Lin-7, putative.	Discs large protein, putative.	0.499
B7PAS0_IXOSC	B7Q7G5_IXOSC	B7PAS0	B7Q7G5	Glutamate receptor interacting protein, putative.	Protein kinase C alpha binding protein, putative.	0.859
B7PQH2_IXOSC	B7Q772_IXOSC	B7PQH2	B7Q772	NMDA-type glutamate receptor subunit 1, variant, putative.	Discs large protein, putative.	0.735
B7PQH2_IXOSC	B7Q9Z1_IXOSC	B7PQH2	B7Q9Z1	NMDA-type glutamate receptor subunit 1, variant, putative.	Glutamate receptor, putative (Fragment); Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family.	0.926
B7PQH2_IXOSC	B7QKI9_IXOSC	B7PQH2	B7QKI9	NMDA-type glutamate receptor subunit 1, variant, putative.	Discs large protein, putative.	0.735
B7PV81_IXOSC	B7Q772_IXOSC	B7PV81	B7Q772	Leucine rich domain-containing protein, putative (Fragment).	Discs large protein, putative.	0.564
B7PV81_IXOSC	B7QKI9_IXOSC	B7PV81	B7QKI9	Leucine rich domain-containing protein, putative (Fragment).	Discs large protein, putative.	0.564
B7Q772_IXOSC	B7P7Q2_IXOSC	B7Q772	B7P7Q2	Discs large protein, putative.	Receptor targeting protein Lin-7, putative.	0.499
B7Q772_IXOSC	B7PQH2_IXOSC	B7Q772	B7PQH2	Discs large protein, putative.	NMDA-type glutamate receptor subunit 1, variant, putative.	0.735
B7Q772_IXOSC	B7PV81_IXOSC	B7Q772	B7PV81	Discs large protein, putative.	Leucine rich domain-containing protein, putative (Fragment).	0.564
B7Q772_IXOSC	B7Q9Z1_IXOSC	B7Q772	B7Q9Z1	Discs large protein, putative.	Glutamate receptor, putative (Fragment); Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family.	0.735
B7Q772_IXOSC	B7QKI9_IXOSC	B7Q772	B7QKI9	Discs large protein, putative.	Discs large protein, putative.	0.929
B7Q7G5_IXOSC	B7PAS0_IXOSC	B7Q7G5	B7PAS0	Protein kinase C alpha binding protein, putative.	Glutamate receptor interacting protein, putative.	0.859
B7Q9Z1_IXOSC	B7PQH2_IXOSC	B7Q9Z1	B7PQH2	Glutamate receptor, putative (Fragment); Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family.	NMDA-type glutamate receptor subunit 1, variant, putative.	0.926
B7Q9Z1_IXOSC	B7Q772_IXOSC	B7Q9Z1	B7Q772	Glutamate receptor, putative (Fragment); Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family.	Discs large protein, putative.	0.735
B7Q9Z1_IXOSC	B7QKI9_IXOSC	B7Q9Z1	B7QKI9	Glutamate receptor, putative (Fragment); Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family.	Discs large protein, putative.	0.735
B7QKI9_IXOSC	B7P7Q2_IXOSC	B7QKI9	B7P7Q2	Discs large protein, putative.	Receptor targeting protein Lin-7, putative.	0.499
B7QKI9_IXOSC	B7PQH2_IXOSC	B7QKI9	B7PQH2	Discs large protein, putative.	NMDA-type glutamate receptor subunit 1, variant, putative.	0.735
B7QKI9_IXOSC	B7PV81_IXOSC	B7QKI9	B7PV81	Discs large protein, putative.	Leucine rich domain-containing protein, putative (Fragment).	0.564