(10 nodes) Cytoplasmic side of apical plasma membrane network (Ixodes scapularis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	B7P283_IXOSC	Zinc finger protein, putative. (199 aa)
	B7P3M5_IXOSC	Uncharacterized protein. (915 aa)
	B7PKA3_IXOSC	PDZ domain-containing protein, putative (Fragment). (226 aa)
	B7PE56_IXOSC	C2 domain-containing protein. (804 aa)
	B7PEM0_IXOSC	RAB GTPase-activating protein, putative. (383 aa)
	B7PJL5_IXOSC	Uncharacterized protein. (1052 aa)
	B7PKA4_IXOSC	PDZ domain-containing protein, putative. (170 aa)
	B7PT38_IXOSC	FERM domain-containing protein. (125 aa)
	B7PZV4_IXOSC	Merlin, putative. (170 aa)
	B7Q5X7_IXOSC	Vinculin, putative. (1069 aa)

Your Current Organism:

Ixodes scapularis

NCBI taxonomy Id: 6945
Other names: I. scapularis, Ixodes dammini, Ixodes sp. DNAS-303-249710, black-legged tick, blacklegged tick, deer tick, shoulder tick

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B7P283_IXOSC	B7PEM0_IXOSC	B7P283	B7PEM0	Zinc finger protein, putative.	RAB GTPase-activating protein, putative.	0.863
B7PEM0_IXOSC	B7P283_IXOSC	B7PEM0	B7P283	RAB GTPase-activating protein, putative.	Zinc finger protein, putative.	0.863
B7PJL5_IXOSC	B7PT38_IXOSC	B7PJL5	B7PT38	Uncharacterized protein.	FERM domain-containing protein.	0.423
B7PJL5_IXOSC	B7PZV4_IXOSC	B7PJL5	B7PZV4	Uncharacterized protein.	Merlin, putative.	0.423
B7PKA3_IXOSC	B7PT38_IXOSC	B7PKA3	B7PT38	PDZ domain-containing protein, putative (Fragment).	FERM domain-containing protein.	0.501
B7PKA3_IXOSC	B7PZV4_IXOSC	B7PKA3	B7PZV4	PDZ domain-containing protein, putative (Fragment).	Merlin, putative.	0.501
B7PKA4_IXOSC	B7PT38_IXOSC	B7PKA4	B7PT38	PDZ domain-containing protein, putative.	FERM domain-containing protein.	0.501
B7PKA4_IXOSC	B7PZV4_IXOSC	B7PKA4	B7PZV4	PDZ domain-containing protein, putative.	Merlin, putative.	0.501
B7PT38_IXOSC	B7PJL5_IXOSC	B7PT38	B7PJL5	FERM domain-containing protein.	Uncharacterized protein.	0.423
B7PT38_IXOSC	B7PKA3_IXOSC	B7PT38	B7PKA3	FERM domain-containing protein.	PDZ domain-containing protein, putative (Fragment).	0.501
B7PT38_IXOSC	B7PKA4_IXOSC	B7PT38	B7PKA4	FERM domain-containing protein.	PDZ domain-containing protein, putative.	0.501
B7PZV4_IXOSC	B7PJL5_IXOSC	B7PZV4	B7PJL5	Merlin, putative.	Uncharacterized protein.	0.423
B7PZV4_IXOSC	B7PKA3_IXOSC	B7PZV4	B7PKA3	Merlin, putative.	PDZ domain-containing protein, putative (Fragment).	0.501
B7PZV4_IXOSC	B7PKA4_IXOSC	B7PZV4	B7PKA4	Merlin, putative.	PDZ domain-containing protein, putative.	0.501