(32 nodes) Mostly uncharacterized, incl. Formin Homology 2 Domain, and GDP metabolic process network (Saprolegnia parasitica)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SPRG_16953	ANK_REP_REGION domain-containing protein. (136 aa)
	SPRG_15780	Uncharacterized protein. (532 aa)
	SPRG_15092	Uncharacterized protein. (190 aa)
	SPRG_15663	Uncharacterized protein. (406 aa)
	SPRG_12651	Serine/threonine protein kinase. (351 aa)
	SPRG_15833	Uncharacterized protein. (332 aa)
	SPRG_14932	Uncharacterized protein. (1129 aa)
	SPRG_12274	LNR domain-containing protein. (592 aa)
	SPRG_10329	Uncharacterized protein. (411 aa)
	SPRG_14153	Serine/threonine protein kinase. (412 aa)
	SPRG_11452	LNR domain-containing protein. (399 aa)
	SPRG_20792	ANK_REP_REGION domain-containing protein. (420 aa)
	SPRG_09382	Uncharacterized protein. (906 aa)
	SPRG_11143	ANK_REP_REGION domain-containing protein. (686 aa)
	SPRG_07862	Uncharacterized protein. (341 aa)
	SPRG_09475	Uncharacterized protein. (1225 aa)
	SPRG_05820	Uncharacterized protein. (1477 aa)
	SPRG_04951	Uncharacterized protein. (2588 aa)
	SPRG_04419	Rho-GAP domain-containing protein. (574 aa)
	SPRG_07596	Ras-like protein Rac1. (195 aa)
	SPRG_19215	FH2 domain-containing protein. (592 aa)
	SPRG_04849	Uncharacterized protein. (369 aa)
	SPRG_04884	Uncharacterized protein. (142 aa)
	SPRG_05111	ANK_REP_REGION domain-containing protein. (72 aa)
	SPRG_01723	Uncharacterized protein. (1471 aa)
	SPRG_01232	Uncharacterized protein. (891 aa)
	SPRG_05272	Uncharacterized protein. (619 aa)
	SPRG_02612	Uncharacterized protein. (859 aa)
	SPRG_00860	Uncharacterized protein. (189 aa)
	SPRG_01750	Uncharacterized protein. (783 aa)
	SPRG_00061	Uncharacterized protein. (1207 aa)
	SPRG_00007	Uncharacterized protein. (709 aa)

Your Current Organism:

Saprolegnia parasitica

NCBI taxonomy Id: 695850
Other names: S. parasitica CBS 223.65, Saprolegnia parasitica CBS 223.65

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SPRG_00007	SPRG_00061	A0A067D962	A0A067D165	Uncharacterized protein.	Uncharacterized protein.	0.745
SPRG_00007	SPRG_01750	A0A067D962	A0A067CX86	Uncharacterized protein.	Uncharacterized protein.	0.747
SPRG_00007	SPRG_02612	A0A067D962	A0A067CUI2	Uncharacterized protein.	Uncharacterized protein.	0.969
SPRG_00007	SPRG_04849	A0A067D962	A0A067CSH7	Uncharacterized protein.	Uncharacterized protein.	0.647
SPRG_00007	SPRG_04884	A0A067D962	A0A067CSK3	Uncharacterized protein.	Uncharacterized protein.	0.610
SPRG_00007	SPRG_05111	A0A067D962	A0A067CSZ7	Uncharacterized protein.	ANK_REP_REGION domain-containing protein.	0.502
SPRG_00007	SPRG_05272	A0A067D962	A0A067CU66	Uncharacterized protein.	Uncharacterized protein.	0.597
SPRG_00007	SPRG_05820	A0A067D962	A0A067CFM6	Uncharacterized protein.	Uncharacterized protein.	0.708
SPRG_00007	SPRG_07596	A0A067D962	A0A067CJ94	Uncharacterized protein.	Ras-like protein Rac1.	0.998
SPRG_00007	SPRG_09382	A0A067D962	A0A067C8E3	Uncharacterized protein.	Uncharacterized protein.	0.747
SPRG_00007	SPRG_09475	A0A067D962	A0A067CFC6	Uncharacterized protein.	Uncharacterized protein.	0.647
SPRG_00007	SPRG_10329	A0A067D962	A0A067C145	Uncharacterized protein.	Uncharacterized protein.	0.969
SPRG_00007	SPRG_11143	A0A067D962	A0A067C9L8	Uncharacterized protein.	ANK_REP_REGION domain-containing protein.	0.502
SPRG_00007	SPRG_11452	A0A067D962	A0A067C2J1	Uncharacterized protein.	LNR domain-containing protein.	0.680
SPRG_00007	SPRG_12274	A0A067D962	A0A067C0M1	Uncharacterized protein.	LNR domain-containing protein.	0.568
SPRG_00007	SPRG_12651	A0A067D962	A0A067BV59	Uncharacterized protein.	Serine/threonine protein kinase.	0.545
SPRG_00007	SPRG_14153	A0A067D962	A0A067C284	Uncharacterized protein.	Serine/threonine protein kinase.	0.545
SPRG_00007	SPRG_14932	A0A067D962	A0A067BZ41	Uncharacterized protein.	Uncharacterized protein.	0.708
SPRG_00007	SPRG_15092	A0A067D962	A0A067BNF6	Uncharacterized protein.	Uncharacterized protein.	0.747
SPRG_00007	SPRG_15663	A0A067D962	A0A067BR16	Uncharacterized protein.	Uncharacterized protein.	0.647