(169 nodes) Ribosome biogenesis, and 16S rRNA methyltransferase RsmB/F network (Saprolegnia parasitica)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SPRG_18170	Uncharacterized protein. (55 aa)
	SPRG_17448	Uncharacterized protein. (87 aa)
	SPRG_17491	Uncharacterized protein. (124 aa)
	SPRG_16982	RRP14 domain-containing protein. (110 aa)
	SPRG_17862	Utp12 domain-containing protein. (268 aa)
	SPRG_16144	SAM_MT_RSMB_NOP domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. (706 aa)
	SPRG_15613	Uncharacterized protein. (96 aa)
	SPRG_15753	Uncharacterized protein; Belongs to the DEAD box helicase family. (660 aa)
	SPRG_15919	SAM_MT_RSMB_NOP domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. (245 aa)
	SPRG_14971	Uncharacterized protein. (193 aa)
	SPRG_14784	60S ribosomal export protein NMD3; Acts as an adapter for the XPO1/CRM1-mediated export of the 60S ribosomal subunit; Belongs to the NMD3 family. (255 aa)
	SPRG_18707	Uncharacterized protein. (264 aa)
	SPRG_15044	Uncharacterized protein. (352 aa)
	SPRG_21792	Uncharacterized protein. (307 aa)
	SPRG_15068	Uncharacterized protein. (364 aa)
	SPRG_18502	Uncharacterized protein. (132 aa)
	SPRG_16142	Ribosomal_L28e domain-containing protein. (194 aa)
	SPRG_14469	WD_REPEATS_REGION domain-containing protein. (411 aa)
	SPRG_15749	Atypical/RIO/RIO2 protein kinase. (440 aa)
	SPRG_13895	Nop domain-containing protein. (486 aa)
	SPRG_17286	Uncharacterized protein. (294 aa)
	SPRG_15430	WD_REPEATS_REGION domain-containing protein. (988 aa)
	SPRG_13724	60S ribosomal export protein NMD3; Acts as an adapter for the XPO1/CRM1-mediated export of the 60S ribosomal subunit; Belongs to the NMD3 family. (500 aa)
	SPRG_15060	Uncharacterized protein. (143 aa)
	SPRG_12602	60S ribosome subunit biogenesis protein NIP7 homolog; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family. (180 aa)
	SPRG_16604	Uncharacterized protein. (134 aa)
	SPRG_16571	KH_8 domain-containing protein. (115 aa)
	SPRG_21793	Uncharacterized protein. (208 aa)
	SPRG_16620	Uncharacterized protein. (117 aa)
	SPRG_10951	18S rRNA biogenesis protein RCL1. (376 aa)
	SPRG_14146	RRP7 domain-containing protein. (245 aa)
	SPRG_11023	Uncharacterized protein. (279 aa)
	SPRG_15873	Brix domain-containing protein. (141 aa)
	SPRG_13782	Uncharacterized protein. (361 aa)
	SPRG_13811	Uncharacterized protein; Belongs to the NOB1 family. (448 aa)
	SPRG_12257	SAM_MT_RSMB_NOP domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. (706 aa)
	SPRG_13730	Brix domain-containing protein. (287 aa)
	SPRG_15516	WD_REPEATS_REGION domain-containing protein. (424 aa)
	SPRG_15707	Uncharacterized protein. (502 aa)
	SPRG_15432	DNA-binding protein. (393 aa)
	SPRG_13146	Uncharacterized protein. (364 aa)
	SPRG_15067	Uncharacterized protein. (573 aa)
	SPRG_11352	WD_REPEATS_REGION domain-containing protein. (611 aa)
	SPRG_11362	Methyltransf_11 domain-containing protein. (326 aa)
	SPRG_09858	Bms1-type G domain-containing protein. (903 aa)
	SPRG_12284	Nop domain-containing protein. (483 aa)
	SPRG_11024	Uncharacterized protein. (836 aa)
	SPRG_14472	Uncharacterized protein. (999 aa)
	SPRG_14482	Uncharacterized protein. (627 aa)
	SPRG_09864	Putative rRNA methyltransferase; Probable methyltransferase involved in the maturation of rRNA and in the biogenesis of ribosomal subunits. (879 aa)
	SPRG_09930	Uncharacterized protein; Belongs to the DEAD box helicase family. (470 aa)
	SPRG_10461	CP-type G domain-containing protein. (555 aa)
	SPRG_13989	Uncharacterized protein. (155 aa)
	SPRG_09578	Uncharacterized protein. (287 aa)
	SPRG_09778	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA. (244 aa)
	SPRG_11539	Brix domain-containing protein. (338 aa)
	SPRG_11427	WD_REPEATS_REGION domain-containing protein. (866 aa)
	SPRG_11447	WD_REPEATS_REGION domain-containing protein. (749 aa)
	SPRG_09592	Uncharacterized protein. (711 aa)
	SPRG_09782	Uncharacterized protein. (634 aa)
	SPRG_22333	U3 small nucleolar ribonucleoprotein protein MPP10; Involved in nucleolar processing of pre-18S ribosomal RNA. Belongs to the MPP10 family. (615 aa)
	EIF6	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis. (245 aa)
	SPRG_10701	Uncharacterized protein. (420 aa)
	SPRG_21217	Uncharacterized protein. (388 aa)
	SPRG_13276	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily. (666 aa)
	SPRG_21102	NOG1_N domain-containing protein. (142 aa)
	SPRG_08561	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires a tRNA-binding adapter protein for full tRNA acetyltransferase activity but not for 18S rRNA acetylation. (1078 aa)
	SPRG_12132	Uncharacterized protein. (501 aa)
	SPRG_08681	Protein SDA1; Required for 60S pre-ribosomal subunits export to the cytoplasm; Belongs to the SDA1 family. (704 aa)
	SPRG_08449	PUM-HD domain-containing protein. (574 aa)
	SPRG_20806	Peptidase_M24 domain-containing protein. (277 aa)
	SPRG_08226	Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family. (633 aa)
	SPRG_12260	Protein MAK16 homolog; Belongs to the MAK16 family. (296 aa)
	SPRG_07725	Uncharacterized protein. (213 aa)
	SPRG_11454	Fcf2 domain-containing protein. (510 aa)
	SPRG_07088	CBF domain-containing protein. (581 aa)
	SPRG_10792	Uncharacterized protein. (1028 aa)
	SPRG_11372	Atypical/RIO/RIO1 protein kinase. (461 aa)
	SPRG_11443	RRM domain-containing protein. (329 aa)
	SPRG_07367	Ribosome biogenesis protein N. (260 aa)
	SPRG_10894	Nop domain-containing protein. (492 aa)
	SPRG_08075	zf-LYAR domain-containing protein. (278 aa)
	SPRG_06738	Uncharacterized protein. (425 aa)
	SPRG_09902	TRASH domain-containing protein. (169 aa)
	SPRG_10396	Brix domain-containing protein. (307 aa)
	SPRG_06348	G domain-containing protein. (620 aa)
	SPRG_07806	Ribosome biogenesis protein WDR12 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat WDR12/YTM1 family. (409 aa)
	SPRG_09636	Uncharacterized protein. (284 aa)
	SPRG_07434	Uncharacterized protein. (862 aa)
	SPRG_20018	Sas10 domain-containing protein. (506 aa)
	SPRG_19972	NUC153 domain-containing protein. (628 aa)
	SPRG_06099	Uncharacterized protein. (462 aa)
	SPRG_05711	AARP2CN domain-containing protein. (538 aa)
	SPRG_05454	Uncharacterized protein; Belongs to the DEAD box helicase family. (494 aa)
	SPRG_06108	WD_REPEATS_REGION domain-containing protein. (906 aa)
	SPRG_09131	Uncharacterized protein. (215 aa)
	SPRG_07257	WD_REPEATS_REGION domain-containing protein. (508 aa)
	SPRG_06038	WD_REPEATS_REGION domain-containing protein. (414 aa)
	SPRG_20609	Uncharacterized protein; Belongs to the DEAD box helicase family. (572 aa)
	SPRG_08225	Uncharacterized protein. (908 aa)
	SPRG_08224	OB_NTP_bind domain-containing protein. (345 aa)
	SPRG_04529	G domain-containing protein. (463 aa)
	SPRG_04734	C2H2-type domain-containing protein. (390 aa)
	SPRG_07486	Uncharacterized protein. (375 aa)
	SPRG_04196	Uncharacterized protein. (812 aa)
	SPRG_05617	Uncharacterized protein. (212 aa)
	SPRG_07485	B2-adapt-app_C domain-containing protein. (385 aa)
	SPRG_03851	WD_REPEATS_REGION domain-containing protein. (333 aa)
	SPRG_05184	Kri1_C domain-containing protein. (631 aa)
	SPRG_03929	Uncharacterized protein. (989 aa)
	SPRG_04028	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (128 aa)
	SPRG_07034	Uncharacterized protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. (476 aa)
	SPRG_20336	Uncharacterized protein. (170 aa)
	SPRG_07401	Uncharacterized protein. (565 aa)
	SPRG_03759	WD_REPEATS_REGION domain-containing protein. (949 aa)
	SPRG_03601	Uncharacterized protein. (151 aa)
	SPRG_07356	Brix domain-containing protein. (466 aa)
	SPRG_03663	Uncharacterized protein. (352 aa)
	SPRG_06276	Nucleolar GTP-binding protein 2; GTPase that associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. NOG2 subfamily. (543 aa)
	SPRG_06286	Uncharacterized protein. (1836 aa)
	SPRG_20167	CP-type G domain-containing protein. (2345 aa)
	SPRG_03005	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family. (325 aa)
	SPRG_02364	Ribosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat BOP1/ERB1 family. (777 aa)
	SPRG_19885	MI domain-containing protein. (839 aa)
	SPRG_03710	WD_REPEATS_REGION domain-containing protein. (678 aa)
	SPRG_02211	RNA helicase. (701 aa)
	SPRG_05585	NUC173 domain-containing protein. (1152 aa)
	SPRG_01604	WD_REPEATS_REGION domain-containing protein. (531 aa)
	SPRG_19747	Uncharacterized protein. (210 aa)
	SPRG_04995	WD_REPEATS_REGION domain-containing protein. (498 aa)
	SPRG_05282	Brix domain-containing protein. (328 aa)
	SPRG_05292	ATP-dependent RNA helicase; Belongs to the DEAD box helicase family. DDX54/DBP10 subfamily. (826 aa)
	SPRG_01442	CK1/CK1/CK1-D protein kinase; Belongs to the protein kinase superfamily. (435 aa)
	SPRG_01480	WD_REPEATS_REGION domain-containing protein. (488 aa)
	SPRG_19098	Uncharacterized protein. (622 aa)
	SPRG_19122	Uncharacterized protein; Belongs to the DEAD box helicase family. (778 aa)
	SPRG_00596	RNA helicase. (714 aa)
	SPRG_02318	WD_REPEATS_REGION domain-containing protein. (810 aa)
	SPRG_04702	40S ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family. (260 aa)
	SPRG_01040	DRIM domain-containing protein. (2794 aa)
	SPRG_01045	Uncharacterized protein. (1834 aa)
	SPRG_03869	Uncharacterized protein. (262 aa)
	SPRG_00426	BP28CT domain-containing protein. (1955 aa)
	SPRG_03600	Uncharacterized protein. (698 aa)
	SPRG_19058	Uncharacterized protein. (796 aa)
	SPRG_01437	CK1/CK1/CK1-D protein kinase; Belongs to the protein kinase superfamily. (439 aa)
	SPRG_01450	60S ribosomal export protein NMD3; Acts as an adapter for the XPO1/CRM1-mediated export of the 60S ribosomal subunit; Belongs to the NMD3 family. (522 aa)
	SPRG_22081	Uncharacterized protein. (227 aa)
	SPRG_03541	rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family. (359 aa)
	SPRG_01506	RRM domain-containing protein. (253 aa)
	SPRG_03143	S4 RNA-binding domain-containing protein. (183 aa)
	SPRG_00553	Uncharacterized protein. (343 aa)
	SPRG_18842	WD_REPEATS_REGION domain-containing protein. (446 aa)
	SPRG_00811	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly. (371 aa)
	SPRG_18957	WD_REPEATS_REGION domain-containing protein. (527 aa)
	SPRG_01078	Uncharacterized protein. (454 aa)
	SPRG_02873	Uncharacterized protein; Belongs to the DEAD box helicase family. (607 aa)
	SPRG_02948	Uncharacterized protein. (344 aa)
	SPRG_02415	KH domain-containing protein. (232 aa)
	SPRG_00194	WD_REPEATS_REGION domain-containing protein. (704 aa)
	SPRG_02362	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes. (237 aa)
	SPRG_01964	CBF domain-containing protein. (793 aa)
	SPRG_02300	Ribosomal RNA-processing protein 8; Probable methyltransferase required to silence rDNA. Belongs to the methyltransferase superfamily. RRP8 family. (273 aa)
	SPRG_01346	rRNA-processing protein FCF1. (197 aa)
	SPRG_00680	Uncharacterized protein. (429 aa)
	SPRG_00694	CK1/TTBK protein kinase. (485 aa)
	SPRG_00973	CP-type G domain-containing protein. (683 aa)
	SPRG_18795	Uncharacterized protein. (688 aa)
	SPRG_00506	Uncharacterized protein; Belongs to the DEAD box helicase family. (487 aa)

Your Current Organism:

Saprolegnia parasitica

NCBI taxonomy Id: 695850
Other names: S. parasitica CBS 223.65, Saprolegnia parasitica CBS 223.65

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EIF6	SPRG_00596	A0A067C3Y4	A0A067CVI2	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis.	RNA helicase.	0.432
EIF6	SPRG_00973	A0A067C3Y4	A0A067D7C2	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis.	CP-type G domain-containing protein.	0.910
EIF6	SPRG_01450	A0A067C3Y4	A0A067CYF3	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis.	60S ribosomal export protein NMD3; Acts as an adapter for the XPO1/CRM1-mediated export of the 60S ribosomal subunit; Belongs to the NMD3 family.	0.920
EIF6	SPRG_01480	A0A067C3Y4	A0A067CUG9	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis.	WD_REPEATS_REGION domain-containing protein.	0.404
EIF6	SPRG_01506	A0A067C3Y4	A0A067CYN4	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis.	RRM domain-containing protein.	0.976
EIF6	SPRG_02211	A0A067C3Y4	A0A067CRR0	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis.	RNA helicase.	0.504
EIF6	SPRG_02362	A0A067C3Y4	A0A067D1N9	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis.	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.	0.985
EIF6	SPRG_02364	A0A067C3Y4	A0A067CQ90	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis.	Ribosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat BOP1/ERB1 family.	0.978
EIF6	SPRG_02873	A0A067C3Y4	A0A067D0V1	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.794
EIF6	SPRG_02948	A0A067C3Y4	A0A067D109	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis.	Uncharacterized protein.	0.970
EIF6	SPRG_03005	A0A067C3Y4	A0A067CPT1	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis.	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family.	0.595
EIF6	SPRG_03663	A0A067C3Y4	A0A067CMN5	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis.	Uncharacterized protein.	0.917
EIF6	SPRG_03869	A0A067C3Y4	A0A067CWU0	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis.	Uncharacterized protein.	0.887
EIF6	SPRG_04028	A0A067C3Y4	A0A067CLL4	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis.	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	0.933
EIF6	SPRG_04196	A0A067C3Y4	A0A067CKE7	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis.	Uncharacterized protein.	0.958
EIF6	SPRG_04529	A0A067C3Y4	A0A067CIS5	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis.	G domain-containing protein.	0.910
EIF6	SPRG_04734	A0A067C3Y4	A0A067CK07	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis.	C2H2-type domain-containing protein.	0.937
EIF6	SPRG_04995	A0A067C3Y4	A0A067CTX2	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis.	WD_REPEATS_REGION domain-containing protein.	0.673
EIF6	SPRG_05282	A0A067C3Y4	A0A067CU79	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis.	Brix domain-containing protein.	0.975
EIF6	SPRG_05292	A0A067C3Y4	A0A067CU93	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis.	ATP-dependent RNA helicase; Belongs to the DEAD box helicase family. DDX54/DBP10 subfamily.	0.859